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Os04g0498600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S- adenosylmethionine decarboxylase beta chain].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.85 | 0.285 | 15.7 | -0.24 | 0.295 | -0.731 | 0.62 | -0.253 | -0.376 | 4.01 | 19.83 | 1196 | -- | -- |
| 36.86 | 0.283 | 15.7 | -0.187 | 0.285 | -0.759 | 0.565 | -- | -0.364 | 3.57 | 20.16 | 1104 | -- | -- |
| 37.86 | 0.287 | 15.7 | -0.186 | 0.288 | -0.766 | -- | 0.00185 | -0.363 | 3.37 | 20 | 1070 | -- | -- |
| 37.86 | 0.287 | 15.7 | -0.185 | 0.29 | -0.756 | -- | -- | -0.363 | 3.55 | 20.1 | 1090 | -- | -- |
| 38 | 0.287 | 15.7 | -0.291 | -- | -0.832 | -- | -0.327 | -0.395 | -- | 19.59 | 370 | -- | -- |
| 52.21 | 0.339 | 15.7 | -0.432 | 0.227 | -- | 0.529 | -- | -0.521 | 5.18 | -- | -- | -- | -- |
| 52.89 | 0.341 | 15.7 | -0.432 | 0.233 | -- | -- | -- | -0.523 | 5.55 | -- | -- | -- | -- |
| 38.05 | 0.287 | 15.7 | -0.238 | -- | -0.836 | -- | -- | -0.377 | -- | 20.03 | 413 | -- | -- |
| 38.63 | 0.289 | 15.7 | -- | 0.295 | -0.825 | -- | -- | -0.332 | 3.58 | 19.3 | 1102 | -- | -- |
| 55.7 | 0.349 | 15.7 | -0.424 | -- | -- | -- | -- | -0.518 | -- | -- | -- | -- | -- |
| 57.8 | 0.356 | 15.7 | -- | 0.226 | -- | -- | -- | -0.475 | 5.63 | -- | -- | -- | -- |
| 39.39 | 0.292 | 15.7 | -- | -- | -0.906 | -- | -- | -0.341 | -- | 19.5 | 420 | -- | -- |
| 60.44 | 0.363 | 15.7 | -- | -- | -- | -- | -- | -0.471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 2 | 35.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 14 | 35.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 19 | 35.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 20 | 35.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 21 | 35.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 23 | 35.98 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 123 | 36.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 127 | 36.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 131 | 36.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 139 | 36.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 147 | 36.33 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 174 | 36.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 325 | 36.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 336 | 36.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 356 | 36.58 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 544 | 36.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 587 | 36.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 22 |
| 815 | 36.97 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 855 | 36.99 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 922 | 37.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 967 | 37.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
