BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0416600 Os09g0416600|AK101668
(237 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0416600 Protein of unknown function DUF868, plant fami... 347 3e-96
Os08g0439600 Protein of unknown function DUF868, plant fami... 178 4e-45
Os06g0181800 90 1e-18
Os03g0343100 72 4e-13
AK069886 65 3e-11
Os04g0407500 Protein of unknown function DUF868, plant fami... 65 4e-11
>Os09g0416600 Protein of unknown function DUF868, plant family protein
Length = 237
Score = 347 bits (891), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 182/237 (76%), Positives = 182/237 (76%)
Query: 1 MRDAGHGRGHKTFVNVRGKEREISVDLVSRGHGXXXXXXXXXXXXXADVGMSVTVDGERV 60
MRDAGHGRGHKTFVNVRGKEREISVDLVSRGHG ADVGMSVTVDGERV
Sbjct: 1 MRDAGHGRGHKTFVNVRGKEREISVDLVSRGHGKDRDKDKDKERDKADVGMSVTVDGERV 60
Query: 61 LHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPPQPAHAVFI 120
LHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPPQPAHAVFI
Sbjct: 61 LHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPPQPAHAVFI 120
Query: 121 FRFELADIAGDDRDSAEVKDEHLLENXXXXXXXXXXXXXXXXXXXXDWSESSSNGENRRK 180
FRFELADIAGDDRDSAEVKDEHLLEN DWSESSSNGENRRK
Sbjct: 121 FRFELADIAGDDRDSAEVKDEHLLENAGSGGGGGAWAGYLGRWGRGDWSESSSNGENRRK 180
Query: 181 RGQARRLXXXXXXXXXXXXXXXXXXXXXXTVMDWASPEEAELQRGHGFSLLVYAWKC 237
RGQARRL TVMDWASPEEAELQRGHGFSLLVYAWKC
Sbjct: 181 RGQARRLAKASSSSSASVASSSASWASGSTVMDWASPEEAELQRGHGFSLLVYAWKC 237
>Os08g0439600 Protein of unknown function DUF868, plant family protein
Length = 406
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/239 (50%), Positives = 143/239 (59%), Gaps = 14/239 (5%)
Query: 1 MRDAGHG-RGHKTFVNVRGKEREISVDLVSRGHGXXXXXXXXXXXXX--ADVGMSVTVDG 57
MRDAG G RGH+++V VRGKEREISVDLVSRG G ADVG+SV++DG
Sbjct: 178 MRDAGRGGRGHRSWVTVRGKEREISVDLVSRGRGRDTGSSGSSSREKDRADVGLSVSIDG 237
Query: 58 ERVLHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPPQPAHA 117
ERVLH+RRLRWKFRG+E+VDLGGGD VQ+SWDLH+WLFP R+ DA+A AHA
Sbjct: 238 ERVLHVRRLRWKFRGSERVDLGGGDRVQLSWDLHNWLFPQREPPTTDAAAH----AHAHA 293
Query: 118 VFIFRFELADIAGDDRDSAEVKDEHLLENXXXXXXXXXXXXXXXXXXXXDWSESSSNGEN 177
VF+FRF+L G + A + L + DWSE+ G
Sbjct: 294 VFVFRFDL----GGGGEEASEHAKALCDKAPRRDAAGILRGYFARWGQKDWSET---GSE 346
Query: 178 RRKRGQARRLXXXXXXXXXXXXXXXXXXXXXXTVMDWASPEEAELQRGHGFSLLVYAWK 236
RRKRG+ RRL TVMDWASPEEAE+QRG GFSLL+YAWK
Sbjct: 347 RRKRGRGRRLAKASSSSSASVASSTASWASGSTVMDWASPEEAEMQRGDGFSLLIYAWK 405
>Os06g0181800
Length = 351
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 95/233 (40%), Gaps = 37/233 (15%)
Query: 4 AGHGRGHKTFVNVRGKEREISVDLVSRGHGXXXXXXXXXXXXXADVGMSVTVDGERVLHI 63
AG G + T V V G E+S+ + D M V +DGE+ L +
Sbjct: 151 AGGGEAYATTVAVAGGRHEVSIAV-------------------EDAVMWVAIDGEKALQV 191
Query: 64 RRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPPQPAHAVFIFRF 123
RRLRWKFRG+E++DL G V+VSWDLH WLF ADA AVF+ RF
Sbjct: 192 RRLRWKFRGSERLDLPRGR-VRVSWDLHGWLF------AADAV----------AVFVLRF 234
Query: 124 ELADIAGDDRDSAEVKDEHLLENXXXXXXXXXXXXXXXXXXXXDWSESSSNGENRRKRGQ 183
E AD+A + E L W S S+ R RG
Sbjct: 235 ETADVADTSKIDMERDAGMLALRQSSFNRKHHHHGGGGGAAAESWCSSDSDRRGWR-RGP 293
Query: 184 ARRLXXXXXXXXXXXXXXXXXXXXXXTVMDWASPEEAELQRGHGFSLLVYAWK 236
R TV DWA+ EEA + G GFSL+V+ WK
Sbjct: 294 FRSGSDSSPAVSVASTSAASSAGSMATVADWATAEEAAMNDGGGFSLVVHLWK 346
>Os03g0343100
Length = 1157
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/34 (94%), Positives = 34/34 (100%)
Query: 51 MSVTVDGERVLHIRRLRWKFRGTEKVDLGGGDGV 84
MSVTVDG+RVLHIRRLRWKFRGTEK+DLGGGDGV
Sbjct: 1124 MSVTVDGKRVLHIRRLRWKFRGTEKIDLGGGDGV 1157
>AK069886
Length = 349
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 53 VTVDGERVLHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPP 112
VTVDG +V+ +RRLRW FRG+ + L GG V ++WDLH WLF D +PA + A
Sbjct: 224 VTVDGRKVVQLRRLRWNFRGSHTLFLDGGAPVDMTWDLHGWLFHAADPSPASSCA----- 278
Query: 113 QPAHAVFIFR 122
AVF F+
Sbjct: 279 ----AVFTFQ 284
>Os04g0407500 Protein of unknown function DUF868, plant family protein
Length = 185
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 9/70 (12%)
Query: 53 VTVDGERVLHIRRLRWKFRGTEKVDLGGGDGVQVSWDLHHWLFPNRDTAPADASAVTPPP 112
VTVDG +V+ +RRLRW FRG+ + L GG V ++WDLH WLF D +PA + A
Sbjct: 60 VTVDGRKVVQLRRLRWNFRGSHTLFLDGGAPVDMTWDLHGWLFHAADPSPASSCA----- 114
Query: 113 QPAHAVFIFR 122
AVF F+
Sbjct: 115 ----AVFTFQ 120
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,823,035
Number of extensions: 297188
Number of successful extensions: 1266
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1264
Number of HSP's successfully gapped: 6
Length of query: 237
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 139
Effective length of database: 11,918,829
Effective search space: 1656717231
Effective search space used: 1656717231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)