BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0414900 Os09g0414900|AK059073
(112 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0414900 Similar to GASA5-like protein (Fragment) 197 1e-51
Os06g0266800 Similar to GAST1 protein precursor 104 2e-23
Os05g0376800 Gibberellin regulated protein family protein 101 1e-22
Os10g0115550 Similar to Gibberellin-regulated protein 2 pre... 87 4e-18
>Os09g0414900 Similar to GASA5-like protein (Fragment)
Length = 112
Score = 197 bits (502), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/112 (86%), Positives = 97/112 (86%)
Query: 1 MALAGRXXXXXXXXXXXXXXXEHKALAKGSTSEHDDNVYQVSKGGQGSLKSYQCSPQCAY 60
MALAGR EHKALAKGSTSEHDDNVYQVSKGGQGSLKSYQCSPQCAY
Sbjct: 1 MALAGRLLVLFAIALLAISIAEHKALAKGSTSEHDDNVYQVSKGGQGSLKSYQCSPQCAY 60
Query: 61 RCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 112
RCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP
Sbjct: 61 RCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 112
>Os06g0266800 Similar to GAST1 protein precursor
Length = 108
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 54/65 (83%)
Query: 48 SLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRG 107
+L+ ++CSP+CA RCS TQYKK CL FCNKCC CLCVP G YGNKG CPCYNNWKTK G
Sbjct: 44 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 103
Query: 108 GPKCP 112
GPKCP
Sbjct: 104 GPKCP 108
>Os05g0376800 Gibberellin regulated protein family protein
Length = 152
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 53/66 (80%)
Query: 47 GSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKR 106
GSL+ +C +CAYRCS T Y+KPC+FFC KCC +CLCV G YGNK CPCYN+WKTKR
Sbjct: 87 GSLRPQECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKR 146
Query: 107 GGPKCP 112
GGPKCP
Sbjct: 147 GGPKCP 152
>Os10g0115550 Similar to Gibberellin-regulated protein 2 precursor
Length = 117
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 33 EHDDNVYQVSKGGQGSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGN 92
+ ++ VY + GG+GSL +C +C+YRCS T + C+ +CN CC CLCVPSG YGN
Sbjct: 26 QKNEAVYHLF-GGEGSLTKNECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGN 84
Query: 93 KGECPCYNNWKTKRGGP 109
K ECPCYNN KT+ G P
Sbjct: 85 KEECPCYNNMKTQEGKP 101
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,004,093
Number of extensions: 151210
Number of successful extensions: 276
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 8
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)