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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0414900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GASA5-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0912) R2 : 0.172
β1 : -1.74 (0.334) R2dD : 0.0513 R2D : 0.0316
β2 : 0.78 (0.246) R2dC : 0.021 R2C : 0.046
β3 : 2.92 (0.476) R2dE : 0.08 R2E : 0.102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.316 (0.197) R2dN8 : 0.00644 R2N8 : 0.00396
σ : 1.7
deviance : 1337.56
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_____
C
peak time of C : 3.73
E
wheather : temperature
threshold : 24.8
memory length : 33
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.99
open length of G : 1.44

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1322.49 1.71 3.9 -2.16 0.919 5.02 -1.89 -20.7 -0.346 4.24 24.84 31 4 1.03
1323.75 1.69 3.82 -1.64 0.869 2.96 -1.18 -- -0.206 3.84 24.96 33 4 1.42
1327.56 1.7 3.9 -2.13 0.89 5.02 -- -21.3 -0.324 3.96 24.73 32 4 1.05
1337.56 1.7 3.84 -1.74 0.78 2.92 -- -- -0.316 3.73 24.8 33 3.99 1.44
1366.76 1.72 3.89 -2.06 -- 5.39 -- -19.2 -0.277 -- 24.64 32 4 1.05
1428.88 1.77 3.87 -1.65 1.36 -- -2.51 -- -0.508 4.32 -- -- -- --
1446.15 1.78 3.87 -1.63 1.34 -- -- -- -0.495 4.2 -- -- -- --
1366.28 1.72 3.84 -1.73 -- 3.3 -- -- -0.295 -- 24.76 31 4 1.46
1417.13 1.75 3.79 -- 0.769 2.74 -- -- -0.131 3.82 24.74 32 3.99 1.43
1543.96 1.84 3.87 -1.58 -- -- -- -- -0.459 -- -- -- -- --
1516.17 1.82 3.83 -- 1.31 -- -- -- -0.313 4.22 -- -- -- --
1441.79 1.77 3.78 -- -- 3.25 -- -- -0.0546 -- 24.69 33 3.99 1.47
1609.47 1.87 3.84 -- -- -- -- -- -0.284 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1333.56 temperature 25 30 < th dose dependent rect. 4 1
2 1333.73 humidity 50 1440 < th dose independent rect. 16 1
3 1334.40 humidity 50 1440 < th dose dependent rect. 16 1
4 1334.59 temperature 25 10 < th dose independent rect. 3 6
6 1335.67 humidity 90 90 > th dose dependent rect. 3 2
8 1339.94 temperature 25 270 < th dose independent rect. 18 6
9 1341.63 temperature 30 720 > th dose dependent rect. 18 1
30 1347.09 temperature 25 270 < th dose independent rect. 22 1
32 1347.62 humidity 50 1440 > th dose independent rect. 16 1
52 1351.32 temperature 25 270 > th dose independent rect. 14 11
54 1351.47 humidity 90 90 > th dose independent rect. 3 2
58 1352.33 temperature 30 90 < th dose dependent rect. 18 8
68 1353.02 temperature 25 10 < th dose independent rect. 22 4
74 1353.92 humidity 70 720 > th dose independent rect. 18 8
76 1354.03 temperature 25 270 > th dose independent sin 15 NA
77 1354.10 temperature 25 90 < th dose independent rect. 3 2
100 1355.28 temperature 25 720 > th dose dependent rect. 16 8
118 1356.87 wind 1 10 < th dose independent rect. 4 2
125 1357.46 wind 1 10 < th dose dependent rect. 4 1
132 1357.70 temperature 25 720 > th dose dependent sin 14 NA
133 1357.77 humidity 70 720 < th dose dependent rect. 18 2
156 1358.30 radiation 1 720 < th dose dependent rect. 18 8
171 1359.24 temperature 25 720 > th dose dependent rect. 16 16
177 1359.59 humidity 70 720 < th dose independent rect. 18 14
180 1359.68 humidity 70 720 < th dose independent rect. 18 2
196 1359.85 temperature 25 720 > th dose dependent rect. 16 3
202 1360.13 temperature 25 10 < th dose independent rect. 3 3
225 1360.59 temperature 25 90 < th dose dependent rect. 15 11
233 1360.85 temperature 25 90 < th dose dependent rect. 13 13
251 1361.66 radiation 1 720 > th dose dependent rect. 18 1
322 1363.06 temperature 25 90 < th dose dependent rect. 21 5
353 1363.60 temperature 25 90 < th dose dependent rect. 23 3
485 1366.44 wind 1 10 < th dose dependent rect. 4 3
492 1366.61 radiation 10 14400 > th dose independent rect. 5 1
522 1367.12 temperature 30 270 < th dose dependent rect. 22 1
523 1367.14 temperature 30 720 > th dose independent rect. 18 1
561 1367.51 wind 1 90 < th dose dependent rect. 4 1
595 1368.37 temperature 25 720 > th dose dependent rect. 21 2
625 1369.08 temperature 25 10 < th dose independent rect. 3 16
642 1369.38 humidity 90 10 > th dose dependent rect. 3 11
653 1369.67 radiation 1 720 > th dose independent rect. 18 1
698 1370.50 temperature 25 270 < th dose independent sin 15 NA
727 1370.93 radiation 30 1440 > th dose independent rect. 16 16
740 1371.16 humidity 90 10 > th dose independent rect. 3 6
800 1372.61 humidity 90 10 > th dose dependent rect. 3 19
805 1372.70 wind 1 720 < th dose dependent rect. 12 1
828 1373.10 humidity 70 720 > th dose independent rect. 18 13
829 1373.11 temperature 20 90 < th dose dependent rect. 2 3
864 1373.63 wind 7 1440 > th dose dependent rect. 22 2
866 1373.67 humidity 70 720 > th dose independent rect. 19 1
932 1374.81 temperature 20 90 > th dose dependent rect. 3 2
970 1375.29 temperature 25 10 < th dose independent rect. 3 19
990 1375.58 atmosphere 1005 30 > th dose independent rect. 4 1