BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0414900 Os09g0414900|AK059073
(112 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74670.1 | chr1:28053378-28053893 FORWARD LENGTH=102 106 2e-24
AT5G15230.1 | chr5:4945017-4946025 FORWARD LENGTH=107 95 9e-21
AT2G30810.1 | chr2:13127945-13128630 REVERSE LENGTH=107 91 2e-19
AT3G02885.1 | chr3:638323-639011 REVERSE LENGTH=98 85 8e-18
AT3G10185.1 | chr3:3145579-3146199 FORWARD LENGTH=104 82 5e-17
AT2G39540.1 | chr2:16500866-16501241 FORWARD LENGTH=88 65 8e-12
AT1G10588.1 | chr1:3501276-3501655 FORWARD LENGTH=91 64 2e-11
AT5G59845.1 | chr5:24111443-24111808 FORWARD LENGTH=90 61 1e-10
AT2G14900.1 | chr2:6404210-6405043 FORWARD LENGTH=109 60 3e-10
AT4G09600.1 | chr4:6073014-6073516 REVERSE LENGTH=100 55 5e-09
AT1G22690.1 | chr1:8027328-8027961 FORWARD LENGTH=120 54 1e-08
AT5G14920.1 | chr5:4826598-4827761 FORWARD LENGTH=276 52 6e-08
AT1G75750.1 | chr1:28441813-28442284 REVERSE LENGTH=99 47 2e-06
>AT1G74670.1 | chr1:28053378-28053893 FORWARD LENGTH=102
Length = 101
Score = 106 bits (264), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 55/74 (74%)
Query: 39 YQVSKGGQGSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPC 98
Y G GSLKSYQC QC RCS T+Y KPC+FFC KCC CLCVP G YGNK CPC
Sbjct: 28 YHPESYGPGSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPC 87
Query: 99 YNNWKTKRGGPKCP 112
YNNWKT++GGPKCP
Sbjct: 88 YNNWKTQQGGPKCP 101
>AT5G15230.1 | chr5:4945017-4946025 FORWARD LENGTH=107
Length = 106
Score = 94.7 bits (234), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 49/68 (72%)
Query: 45 GQGSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKT 104
G GSLK QC +C RC +TQY K C+ FCNKCC CLCVP G YGNK C CYNNWKT
Sbjct: 39 GPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKT 98
Query: 105 KRGGPKCP 112
+ GGPKCP
Sbjct: 99 QEGGPKCP 106
>AT2G30810.1 | chr2:13127945-13128630 REVERSE LENGTH=107
Length = 106
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 56/69 (81%)
Query: 44 GGQGSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWK 103
GG+GSLK +C C YRCS T ++KPCLFFCNKCCN CLCVPSG YG+K ECPCYNNW
Sbjct: 38 GGEGSLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWT 97
Query: 104 TKRGGPKCP 112
TK GGPKCP
Sbjct: 98 TKEGGPKCP 106
>AT3G02885.1 | chr3:638323-639011 REVERSE LENGTH=98
Length = 97
Score = 84.7 bits (208), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 36 DNVYQVSKGGQGSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGE 95
N+ Q ++GG G LK QC+ +C++RCS T +KKPC+FFC KCC CLCVP G +GNK
Sbjct: 22 SNLVQAARGG-GKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQT 80
Query: 96 CPCYNNWKTKRGGPKCP 112
CPCYNNWKTK G PKCP
Sbjct: 81 CPCYNNWKTKEGRPKCP 97
>AT3G10185.1 | chr3:3145579-3146199 FORWARD LENGTH=104
Length = 103
Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 50/60 (83%)
Query: 53 QCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 112
+C P+C RCS TQYKKPCLFFCNKCCN CLCVP G YGNK CPCYNNWKTK GGPKCP
Sbjct: 44 ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103
>AT2G39540.1 | chr2:16500866-16501241 FORWARD LENGTH=88
Length = 87
Score = 64.7 bits (156), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 54 CSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 112
C +C RCS+ + CL +CN CC C CVPSG +G+K ECPCY + K +GG KCP
Sbjct: 29 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87
>AT1G10588.1 | chr1:3501276-3501655 FORWARD LENGTH=91
Length = 90
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 48 SLKSYQCSPQCAYRCSQT-QYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKR 106
S S C +C+ RCS+ + + CL C+ CC C CVPSG YGNK ECPCY + K +
Sbjct: 25 SADSSACGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDECPCYRDMKNSK 84
Query: 107 GGPKCP 112
GG KCP
Sbjct: 85 GGSKCP 90
>AT5G59845.1 | chr5:24111443-24111808 FORWARD LENGTH=90
Length = 89
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 51 SYQCSPQCAYRCSQTQYKKPCLFFCNKCCNAC-LCVPSGLYGNKGECPCYNNWKTKRGGP 109
S C +C RCS+ + CL +CN CC C CVPSG YGNK ECPCY + K +G
Sbjct: 27 SSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTS 86
Query: 110 KCP 112
KCP
Sbjct: 87 KCP 89
>AT2G14900.1 | chr2:6404210-6405043 FORWARD LENGTH=109
Length = 108
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 35/59 (59%)
Query: 54 CSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 112
C +C RC + K CL +C CC C CVPSG YGNK EC CY + + +G PKCP
Sbjct: 50 CGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108
>AT4G09600.1 | chr4:6073014-6073516 REVERSE LENGTH=100
Length = 99
Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 30 STSEHDDNVYQVSKGGQGSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGL 89
+T E + + S+ G+G +K C +C RCS++ CL CN CC C CVP G
Sbjct: 18 TTFELHVHAAEDSQVGEGVVK-IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGT 76
Query: 90 YGNKGECPCYNNWKTKRGGPKCP 112
GN CPCY + T+ G KCP
Sbjct: 77 AGNHHLCPCYASITTRGGRLKCP 99
>AT1G22690.1 | chr1:8027328-8027961 FORWARD LENGTH=120
Length = 119
Score = 53.9 bits (128), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 35/78 (44%)
Query: 35 DDNVYQVSKGGQGSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKG 94
D+N K C CA RCS+T KK C C CC C CVP G GN
Sbjct: 42 DENQTAAFKRTYHHRPRINCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTA 101
Query: 95 ECPCYNNWKTKRGGPKCP 112
CPCY + +T KCP
Sbjct: 102 SCPCYASIRTHGNKLKCP 119
>AT5G14920.1 | chr5:4826598-4827761 FORWARD LENGTH=276
Length = 275
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 52 YQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGEC-PCYNNWKTKRGGPK 110
C P C RC Q K C+ C CC C CVP G YGNK +C CY N KT+ G K
Sbjct: 214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273
Query: 111 CP 112
CP
Sbjct: 274 CP 275
>AT1G75750.1 | chr1:28441813-28442284 REVERSE LENGTH=99
Length = 98
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 42 SKGGQGSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNN 101
S+ G K C C RC ++ + C C CC C CVP G YGN +C CY +
Sbjct: 28 SQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYAS 87
Query: 102 WKTKRGGPKCP 112
T G KCP
Sbjct: 88 LTTHGGRRKCP 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,514,838
Number of extensions: 99644
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 15
Length of query: 112
Length of database: 11,106,569
Length adjustment: 81
Effective length of query: 31
Effective length of database: 8,885,873
Effective search space: 275462063
Effective search space used: 275462063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)