Os05g0376800 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0376800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Gibberellin regulated protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.9	(0.0212)	R²	:	0.583
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	10.2	(0.402)	R²_dE	:	0.583	R²_E	:	0.581
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.063	(0.0447)	R²_dN8	:	0.00234	R²_N8	:	0.000179
σ	:	0.399
deviance	:	73.42
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	17.94
memory length	:	86
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	0.835
open length of G	:	0.783

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
72.54	0.4	2.91	0.000658	0.0675	6.73	-0.388	15.2	0.0532	6.89	18.76	96	1.24	0.166
72.83	0.397	2.91	-0.0655	0.0577	10.1	-0.26	--	0.0424	8.54	18	82	0.856	0.621
72.89	0.398	2.91	-0.00731	0.0665	6.73	--	15.1	0.055	6.86	18.73	98	1.23	0.163
73.05	0.398	2.9	-0.0693	0.0672	10.2	--	--	0.0544	7.04	17.92	87	0.817	0.384
73.13	0.398	2.91	-0.00558	--	6.75	--	15.2	0.0555	--	18.73	97	1.23	0.156
175.21	0.621	2.91	0.00993	0.107	--	0.275	--	0.0343	2.66	--	--	--	--
175.35	0.62	2.91	0.00277	0.123	--	--	--	0.0322	4.22	--	--	--	--
73.29	0.399	2.9	-0.0695	--	10.2	--	--	0.0553	--	17.93	87	0.822	0.648
73.19	0.398	2.9	--	0.0663	10.1	--	--	0.062	7.03	17.93	86	0.83	0.661
176.16	0.62	2.91	0.00769	--	--	--	--	0.0355	--	--	--	--	--
175.35	0.619	2.91	--	0.123	--	--	--	0.0319	4.22	--	--	--	--
73.42	0.399	2.9	--	--	10.2	--	--	0.063	--	17.94	86	0.835	0.783
176.16	0.62	2.91	--	--	--	--	--	0.0346	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	110.08	temperature	20.0	90	< th	dose dependent	rect.	1	1
2	110.78	temperature	20.0	10	< th	dose dependent	rect.	2	1
4	115.23	temperature	20.0	30	< th	dose dependent	rect.	24	3
14	120.47	temperature	20.0	90	< th	dose independent	rect.	24	1
28	138.39	humidity	90.0	10	< th	dose independent	rect.	2	1
35	145.41	precipitation	0.1	720	> th	dose dependent	rect.	17	1
83	156.94	precipitation	0.1	720	> th	dose independent	rect.	17	1
124	160.42	temperature	20.0	270	< th	dose independent	rect.	8	18
131	160.62	temperature	20.0	270	< th	dose independent	rect.	11	15
152	161.45	atmosphere	1000.0	1440	< th	dose independent	rect.	2	1
155	161.47	atmosphere	1005.0	30	> th	dose independent	rect.	1	1
159	161.58	atmosphere	1000.0	1440	< th	dose dependent	rect.	2	1
168	161.86	atmosphere	1000.0	1440	> th	dose independent	rect.	3	1
174	161.94	atmosphere	1000.0	1440	> th	dose independent	rect.	2	3
203	162.57	temperature	20.0	90	< th	dose dependent	rect.	13	14
364	163.75	temperature	20.0	270	> th	dose independent	sin	15	NA
449	164.22	wind	1.0	10	> th	dose independent	rect.	1	1
473	164.33	temperature	20.0	270	> th	dose independent	rect.	13	13
577	165.03	wind	1.0	10	> th	dose dependent	rect.	1	1
606	165.27	temperature	20.0	90	< th	dose dependent	rect.	24	23
613	165.31	atmosphere	1000.0	1440	> th	dose independent	rect.	7	1
636	165.38	temperature	20.0	270	< th	dose independent	sin	15	NA
706	165.60	humidity	90.0	90	< th	dose dependent	rect.	24	1
738	165.71	atmosphere	1000.0	1440	< th	dose dependent	rect.	7	1
756	165.77	temperature	20.0	90	< th	dose dependent	sin	11	NA
796	165.93	temperature	20.0	90	< th	dose independent	sin	12	NA
838	166.08	precipitation	0.1	720	> th	dose dependent	rect.	8	10
843	166.10	humidity	90.0	10	< th	dose dependent	rect.	1	1
851	166.12	temperature	20.0	720	> th	dose independent	rect.	20	5
878	166.24	temperature	20.0	720	< th	dose dependent	rect.	21	1
923	166.43	humidity	90.0	10	< th	dose independent	rect.	1	13
932	166.44	atmosphere	1000.0	720	< th	dose dependent	rect.	14	1
966	166.55	wind	1.0	30	< th	dose independent	rect.	4	1
968	166.55	wind	1.0	30	< th	dose dependent	rect.	4	1