BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0376800 Os05g0376800|AK106775
(152 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0376800 Gibberellin regulated protein family protein 196 7e-51
Os09g0414900 Similar to GASA5-like protein (Fragment) 102 1e-22
Os06g0266800 Similar to GAST1 protein precursor 98 2e-21
Os10g0115550 Similar to Gibberellin-regulated protein 2 pre... 82 1e-16
>Os05g0376800 Gibberellin regulated protein family protein
Length = 152
Score = 196 bits (497), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 100/152 (65%)
Query: 1 MEGVGVGVRIRXXXXXXXXXXXXXSSYQQGQAEASYMPWXXXXXXXXXXXXXXXXXXXXX 60
MEGVGVGVRIR SSYQQGQAEASYMPW
Sbjct: 1 MEGVGVGVRIRALLCCIAMAAMLLSSYQQGQAEASYMPWPPATPPPPAAAAANSTSTAAA 60
Query: 61 XXXXXXXXXXXXXXXXXXFPMYGVTPGSLRPQECGGRCAYRCSATAYRKPCMFFCQKCCA 120
FPMYGVTPGSLRPQECGGRCAYRCSATAYRKPCMFFCQKCCA
Sbjct: 61 NNSSSSSSTTAPPQQPTAFPMYGVTPGSLRPQECGGRCAYRCSATAYRKPCMFFCQKCCA 120
Query: 121 SCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 152
SCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP
Sbjct: 121 SCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 152
>Os09g0414900 Similar to GASA5-like protein (Fragment)
Length = 112
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 53/66 (80%)
Query: 87 GSLRPQECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKR 146
GSL+ +C +CAYRCS T Y+KPC+FFC KCC +CLCV G YGNK CPCYN+WKTKR
Sbjct: 47 GSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKR 106
Query: 147 GGPKCP 152
GGPKCP
Sbjct: 107 GGPKCP 112
>Os06g0266800 Similar to GAST1 protein precursor
Length = 108
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 52/65 (80%)
Query: 88 SLRPQECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRG 147
+LRP EC +CA RCS T Y+K C+ FC KCCA CLCV PGTYGNK +CPCYN+WKTK G
Sbjct: 44 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 103
Query: 148 GPKCP 152
GPKCP
Sbjct: 104 GPKCP 108
>Os10g0115550 Similar to Gibberellin-regulated protein 2 precursor
Length = 117
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 45/64 (70%)
Query: 87 GSLRPQECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKR 146
GSL EC G+C+YRCSAT++ CM +C CC CLCV GTYGNK+ CPCYN+ KT+
Sbjct: 39 GSLTKNECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQE 98
Query: 147 GGPK 150
G P
Sbjct: 99 GKPN 102
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.511
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,084,092
Number of extensions: 134612
Number of successful extensions: 352
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 10
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)