Os06g0266800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GAST1 protein precursor.
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Os06g0266800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GAST1 protein precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 632.89 | 1.18 | 4.61 | -2.73 | 0.602 | 2.24 | -1.52 | -3.27 | -1.06 | 22.5 | 21.54 | 1758 | -- | -- |
| 638.13 | 1.18 | 4.51 | -1.84 | 0.683 | 2.12 | -1.6 | -- | -0.826 | 22 | 19.65 | 1628 | -- | -- |
| 642.25 | 1.18 | 4.62 | -2.74 | 0.612 | 2.24 | -- | -3.54 | -1.07 | 22.3 | 21.7 | 1758 | -- | -- |
| 647.89 | 1.19 | 4.51 | -1.78 | 0.702 | 2.09 | -- | -- | -0.82 | 21.7 | 19.8 | 1613 | -- | -- |
| 644.11 | 1.18 | 4.61 | -2.85 | -- | 2.69 | -- | -5.08 | -1.06 | -- | 22.17 | 894 | -- | -- |
| 765.17 | 1.3 | 4.4 | -1.06 | 0.743 | -- | -1.55 | -- | -0.335 | 21.9 | -- | -- | -- | -- |
| 774.39 | 1.3 | 4.4 | -0.996 | 0.755 | -- | -- | -- | -0.331 | 21.7 | -- | -- | -- | -- |
| 657.32 | 1.19 | 4.48 | -1.7 | -- | 2.41 | -- | -- | -0.791 | -- | 19.98 | 866 | -- | -- |
| 718.32 | 1.25 | 4.43 | -- | 0.72 | 1.45 | -- | -- | -0.504 | 21.1 | 21.6 | 1417 | -- | -- |
| 808.22 | 1.33 | 4.38 | -0.989 | -- | -- | -- | -- | -0.332 | -- | -- | -- | -- | -- |
| 800.54 | 1.32 | 4.37 | -- | 0.753 | -- | -- | -- | -0.22 | 21.6 | -- | -- | -- | -- |
| 724.84 | 1.25 | 4.42 | -- | -- | 1.9 | -- | -- | -0.504 | -- | 21.65 | 836 | -- | -- |
| 834.04 | 1.35 | 4.35 | -- | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 630.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 18 |
| 16 | 631.99 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 19 | 632.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 22 | 632.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 24 | 632.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 35 | 632.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 40 | 633.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 46 | 633.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 11 |
| 53 | 633.28 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 99 | 634.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 169 | 635.66 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 174 | 635.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 178 | 635.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 183 | 635.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 196 | 636.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 599 | 640.56 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 750 | 642.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 19 |
| 762 | 642.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 833 | 643.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 878 | 643.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 899 | 643.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |