BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0266800 Os06g0266800|AK062516
(108 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0266800 Similar to GAST1 protein precursor 140 3e-34
Os09g0414900 Similar to GASA5-like protein (Fragment) 105 8e-24
Os05g0376800 Gibberellin regulated protein family protein 97 2e-21
Os10g0115550 Similar to Gibberellin-regulated protein 2 pre... 79 1e-15
>Os06g0266800 Similar to GAST1 protein precursor
Length = 108
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 72/90 (80%)
Query: 19 SRVQEVMXXXXXXXXXXXXXXXXXXNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKC 78
SRVQEVM NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKC
Sbjct: 19 SRVQEVMAGGRGRGGGGGGGVAGGGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKC 78
Query: 79 LCVPPGTYGNKGACPCYNNWKTKEGGPKCP 108
LCVPPGTYGNKGACPCYNNWKTKEGGPKCP
Sbjct: 79 LCVPPGTYGNKGACPCYNNWKTKEGGPKCP 108
>Os09g0414900 Similar to GASA5-like protein (Fragment)
Length = 112
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 54/65 (83%)
Query: 44 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 103
+L+ ++CSP+CA RCS TQYKK CL FCNKCC CLCVP G YGNKG CPCYNNWKTK G
Sbjct: 48 SLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRG 107
Query: 104 GPKCP 108
GPKCP
Sbjct: 108 GPKCP 112
>Os05g0376800 Gibberellin regulated protein family protein
Length = 152
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 52/65 (80%)
Query: 44 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 103
+LRP EC +CA RCS T Y+K C+ FC KCCA CLCV PGTYGNK +CPCYN+WKTK G
Sbjct: 88 SLRPQECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRG 147
Query: 104 GPKCP 108
GPKCP
Sbjct: 148 GPKCP 152
>Os10g0115550 Similar to Gibberellin-regulated protein 2 precursor
Length = 117
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 44 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 103
+L EC KC+ RCS T + C+T+CN CC +CLCVP GTYGNK CPCYNN KT+EG
Sbjct: 40 SLTKNECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEG 99
Query: 104 GP 105
P
Sbjct: 100 KP 101
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,190,858
Number of extensions: 110858
Number of successful extensions: 314
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 11
Length of query: 108
Length of database: 17,035,801
Length adjustment: 76
Effective length of query: 32
Effective length of database: 13,067,537
Effective search space: 418161184
Effective search space used: 418161184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)