BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0266800 Os06g0266800|AK062516
(108 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74670.1 | chr1:28053378-28053893 FORWARD LENGTH=102 100 3e-22
AT5G15230.1 | chr5:4945017-4946025 FORWARD LENGTH=107 96 3e-21
AT3G10185.1 | chr3:3145579-3146199 FORWARD LENGTH=104 86 4e-18
AT3G02885.1 | chr3:638323-639011 REVERSE LENGTH=98 77 3e-15
AT2G30810.1 | chr2:13127945-13128630 REVERSE LENGTH=107 74 2e-14
AT2G39540.1 | chr2:16500866-16501241 FORWARD LENGTH=88 65 7e-12
AT1G22690.1 | chr1:8027328-8027961 FORWARD LENGTH=120 63 3e-11
AT1G10588.1 | chr1:3501276-3501655 FORWARD LENGTH=91 62 5e-11
AT2G14900.1 | chr2:6404210-6405043 FORWARD LENGTH=109 62 6e-11
AT4G09600.1 | chr4:6073014-6073516 REVERSE LENGTH=100 61 1e-10
AT5G59845.1 | chr5:24111443-24111808 FORWARD LENGTH=90 60 2e-10
AT5G14920.1 | chr5:4826598-4827761 FORWARD LENGTH=276 58 1e-09
AT2G18420.1 | chr2:7993861-7994334 FORWARD LENGTH=95 52 5e-08
AT1G75750.1 | chr1:28441813-28442284 REVERSE LENGTH=99 52 7e-08
>AT1G74670.1 | chr1:28053378-28053893 FORWARD LENGTH=102
Length = 101
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 54/65 (83%)
Query: 44 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 103
+L+ ++C +C RCSNT+Y K C+ FC KCCAKCLCVPPGTYGNK CPCYNNWKT++G
Sbjct: 37 SLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQG 96
Query: 104 GPKCP 108
GPKCP
Sbjct: 97 GPKCP 101
>AT5G15230.1 | chr5:4945017-4946025 FORWARD LENGTH=107
Length = 106
Score = 96.3 bits (238), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 51/65 (78%)
Query: 44 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 103
+L+ +C +C RC TQY KAC+TFCNKCC KCLCVPPG YGNK C CYNNWKT+EG
Sbjct: 42 SLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEG 101
Query: 104 GPKCP 108
GPKCP
Sbjct: 102 GPKCP 106
>AT3G10185.1 | chr3:3145579-3146199 FORWARD LENGTH=104
Length = 103
Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 51/61 (83%)
Query: 48 WECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEGGPKC 107
EC P+C RCSNTQYKK CL FCNKCC KCLCVPPGTYGNK CPCYNNWKTK GGPKC
Sbjct: 43 LECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKC 102
Query: 108 P 108
P
Sbjct: 103 P 103
>AT3G02885.1 | chr3:638323-639011 REVERSE LENGTH=98
Length = 97
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 52/64 (81%)
Query: 45 LRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEGG 104
L+P +C+ KC+ RCS T +KK C+ FC KCC KCLCVPPGT+GNK CPCYNNWKTKEG
Sbjct: 34 LKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGR 93
Query: 105 PKCP 108
PKCP
Sbjct: 94 PKCP 97
>AT2G30810.1 | chr2:13127945-13128630 REVERSE LENGTH=107
Length = 106
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 50/65 (76%)
Query: 44 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 103
+L+P EC C RCS T ++K CL FCNKCC KCLCVP GTYG+K CPCYNNW TKEG
Sbjct: 42 SLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEG 101
Query: 104 GPKCP 108
GPKCP
Sbjct: 102 GPKCP 106
>AT2G39540.1 | chr2:16500866-16501241 FORWARD LENGTH=88
Length = 87
Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 37/60 (61%)
Query: 49 ECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEGGPKCP 108
C KC RCS + CL +CN CC KC CVP GT+G+K CPCY + K +GG KCP
Sbjct: 28 SCGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87
>AT1G22690.1 | chr1:8027328-8027961 FORWARD LENGTH=120
Length = 119
Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 35/61 (57%)
Query: 48 WECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEGGPKC 107
C CA RCS T KK C C CCAKC CVPPGT GN +CPCY + +T KC
Sbjct: 59 INCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKC 118
Query: 108 P 108
P
Sbjct: 119 P 119
>AT1G10588.1 | chr1:3501276-3501655 FORWARD LENGTH=91
Length = 90
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 50 CSPKCAGRCSNT-QYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEGGPKCP 108
C KC+ RCS + + CL C+ CC KC CVP GTYGNK CPCY + K +GG KCP
Sbjct: 31 CGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDECPCYRDMKNSKGGSKCP 90
>AT2G14900.1 | chr2:6404210-6405043 FORWARD LENGTH=109
Length = 108
Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 45 LRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEGG 104
L W C KC GRC K CL +C CC C CVP GTYGNK C CY + + +G
Sbjct: 46 LEKW-CGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGT 104
Query: 105 PKCP 108
PKCP
Sbjct: 105 PKCP 108
>AT4G09600.1 | chr4:6073014-6073516 REVERSE LENGTH=100
Length = 99
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 36/61 (59%)
Query: 48 WECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEGGPKC 107
+C +C GRCS + CL CN CC +C CVPPGT GN CPCY + T+ G KC
Sbjct: 39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKC 98
Query: 108 P 108
P
Sbjct: 99 P 99
>AT5G59845.1 | chr5:24111443-24111808 FORWARD LENGTH=90
Length = 89
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 50 CSPKCAGRCSNTQYKKACLTFCNKCCAKC-LCVPPGTYGNKGACPCYNNWKTKEGGPKCP 108
C KC RCS + CL +CN CC KC CVP GTYGNK CPCY + K +G KCP
Sbjct: 30 CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTSKCP 89
>AT5G14920.1 | chr5:4826598-4827761 FORWARD LENGTH=276
Length = 275
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 48 WECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGAC-PCYNNWKTKEGGPK 106
+C P C RC K C+ C CC +C CVPPGTYGNK C CY N KT+ G K
Sbjct: 214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273
Query: 107 CP 108
CP
Sbjct: 274 CP 275
>AT2G18420.1 | chr2:7993861-7994334 FORWARD LENGTH=95
Length = 94
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%)
Query: 48 WECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEGGPKC 107
+C+ +C RCS + C C CCA+C CV PGT GN CPCY + T G KC
Sbjct: 34 IDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKC 93
Query: 108 P 108
P
Sbjct: 94 P 94
>AT1G75750.1 | chr1:28441813-28442284 REVERSE LENGTH=99
Length = 98
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%)
Query: 46 RPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEGGP 105
+ +C C RC ++ + C C CC +C CVPPGTYGN C CY + T G
Sbjct: 36 KKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRR 95
Query: 106 KCP 108
KCP
Sbjct: 96 KCP 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,961,705
Number of extensions: 69530
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 15
Length of query: 108
Length of database: 11,106,569
Length adjustment: 77
Effective length of query: 31
Effective length of database: 8,995,537
Effective search space: 278861647
Effective search space used: 278861647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)