BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0390400 Os09g0390400|AK071796
         (80 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0390400  Conserved hypothetical protein                      114   2e-26
Os08g0307700                                                       72   6e-14
Os04g0174200  Conserved hypothetical protein                       69   9e-13

>Os09g0390400 Conserved hypothetical protein
          Length = 80

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 58/80 (72%)

Query: 1  GVPEQAEAGXXXXXXXXXXXXXXXXXXXXXXTVQTLPTSGQPVDLLICCVVNFVLYWMFV 60
          GVPEQAEAG                      TVQTLPTSGQPVDLLICCVVNFVLYWMFV
Sbjct: 1  GVPEQAEAGPAAVQALLVPVPAAVQALPIPATVQTLPTSGQPVDLLICCVVNFVLYWMFV 60

Query: 61 GLCWMLIGLKPLCYMGCYYV 80
          GLCWMLIGLKPLCYMGCYYV
Sbjct: 61 GLCWMLIGLKPLCYMGCYYV 80



>Os08g0307700 
          Length = 101

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 41/69 (59%), Gaps = 12/69 (17%)

Query: 1   GVPEQAEAGXXXXXXXXXXXXXXXXXXXXXXTVQTLPTSGQPVDLLICCVVNFVLYWMFV 60
           GVPEQAEA                        VQ  PTS Q VDLLICCVVNFVLYWMFV
Sbjct: 45  GVPEQAEA------------PAAVQALPIPAAVQAFPTSDQLVDLLICCVVNFVLYWMFV 92

Query: 61  GLCWMLIGL 69
           GLCWMLIGL
Sbjct: 93  GLCWMLIGL 101



>Os04g0174200 Conserved hypothetical protein
          Length = 73

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 38/65 (58%), Gaps = 12/65 (18%)

Query: 1  GVPEQAEAGXXXXXXXXXXXXXXXXXXXXXXTVQTLPTSGQPVDLLICCVVNFVLYWMFV 60
          GVPE+ EA                        VQ LPTSGQP DLLICCVVNFVLYWMFV
Sbjct: 1  GVPEEGEA------------PAAIQALPVPAAVQALPTSGQPADLLICCVVNFVLYWMFV 48

Query: 61 GLCWM 65
          GLCWM
Sbjct: 49 GLCWM 53



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.147    0.532 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,996,330
Number of extensions: 53019
Number of successful extensions: 122
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 3
Length of query: 80
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 29
Effective length of database: 14,372,887
Effective search space: 416813723
Effective search space used: 416813723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)