BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0359900 Os09g0359900|AK105521
(312 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0359900 Conserved hypothetical protein 539 e-154
Os04g0492400 Conserved hypothetical protein 194 6e-50
Os09g0514300 Conserved hypothetical protein 182 4e-46
>Os09g0359900 Conserved hypothetical protein
Length = 312
Score = 539 bits (1389), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/312 (87%), Positives = 273/312 (87%)
Query: 1 MEGKETKNTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVLLSEESPV 60
MEGKETKNTV VEVLLSEESPV
Sbjct: 1 MEGKETKNTVAAAASSSPLFSFSNSNASFGFGFGFSASSGPPPPPPPPAVEVLLSEESPV 60
Query: 61 AAGELEPVVIDDSLSIYKGRASTSDVFGVKNSDLVPGKYEGGLKLWEGSLDLVKTLNSDI 120
AAGELEPVVIDDSLSIYKGRASTSDVFGVKNSDLVPGKYEGGLKLWEGSLDLVKTLNSDI
Sbjct: 61 AAGELEPVVIDDSLSIYKGRASTSDVFGVKNSDLVPGKYEGGLKLWEGSLDLVKTLNSDI 120
Query: 121 KEDRLLLEGKRVLELGCGHGLPGIYAILKGAVLVHFQDFNAEVLRCLTIPNVKANLLKES 180
KEDRLLLEGKRVLELGCGHGLPGIYAILKGAVLVHFQDFNAEVLRCLTIPNVKANLLKES
Sbjct: 121 KEDRLLLEGKRVLELGCGHGLPGIYAILKGAVLVHFQDFNAEVLRCLTIPNVKANLLKES 180
Query: 181 SEEKFTSGSVGFFAGDWSEIDSLLLRGDADLDKSTNSHENDTAYNGYDIILMAETVYAVS 240
SEEKFTSGSVGFFAGDWSEIDSLLLRGDADLDKSTNSHENDTAYNGYDIILMAETVYAVS
Sbjct: 181 SEEKFTSGSVGFFAGDWSEIDSLLLRGDADLDKSTNSHENDTAYNGYDIILMAETVYAVS 240
Query: 241 SLPNLYRLIKKCLRYPGGIVYMAGKKHYFGVGGGTRHFVRLVTEDGAMQSDLLAEVADGS 300
SLPNLYRLIKKCLRYPGGIVYMAGKKHYFGVGGGTRHFVRLVTEDGAMQSDLLAEVADGS
Sbjct: 241 SLPNLYRLIKKCLRYPGGIVYMAGKKHYFGVGGGTRHFVRLVTEDGAMQSDLLAEVADGS 300
Query: 301 SNVREVWKLSFK 312
SNVREVWKLSFK
Sbjct: 301 SNVREVWKLSFK 312
>Os04g0492400 Conserved hypothetical protein
Length = 346
Score = 194 bits (494), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 152/291 (52%), Gaps = 57/291 (19%)
Query: 74 LSIYKGRASTSDVFGVKNSDLVPGKYEGGLKLWEGSLDLVKTLNSDIKEDRLLLEGKRVL 133
L I+KG+ S +D+ S++V KY+G LK WE S+ LV + ++I++ +L GKRVL
Sbjct: 61 LDIFKGKVSVADMIAFSPSEVVASKYDGSLKYWESSITLVNIIKNEIRDGQLSFRGKRVL 120
Query: 134 ELGCGHGLPGIYAILKGAVLVHFQDFNAEVLRCLTIPNVKANLLKESSEEKFTSGS---- 189
ELGCG GL GI+A LKGA VHFQD NAE +RC IPNV ANL + + S S
Sbjct: 121 ELGCGSGLAGIFACLKGASTVHFQDTNAETIRCRAIPNVLANLEQARDRQNRPSESPVTP 180
Query: 190 --------VGFFAGDWSEIDSLL-------------------LRGDADLDKST------- 215
V F+AGDW E+ ++L + G + D S+
Sbjct: 181 SRQLLAPNVHFYAGDWEELPTILSVVHPPAAPTNLSFSEDDFMDGCSSHDGSSIVGVDNC 240
Query: 216 --------------NSHENDTAYNGYDIILMAETVYAVSSLPNLYRLIKKCLRYPGGIVY 261
+ E D A GYD+IL++E YAV+SL LY LI KCLR P G++Y
Sbjct: 241 PRRSRKLSGSRAWERASETDQADGGYDVILISEVPYAVNSLKKLYALITKCLRPPYGVLY 300
Query: 262 MAGKKHYFGVGGGTRHFVRLVTEDGAMQSDLLAEVADGSSNVREVWKLSFK 312
+ KK+ G GG R L+ E+G + L E+AD RE+WK FK
Sbjct: 301 VVSKKNLVGSNGGARQLRALMEEEGVLGGHFLTELAD-----REIWKFFFK 346
>Os09g0514300 Conserved hypothetical protein
Length = 285
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 148/289 (51%), Gaps = 60/289 (20%)
Query: 79 GRASTSDVFGVKNSDLVPGKYEGGLKLWEGSLDLVKTLNSDIKEDRLLLEGKRVLELGCG 138
G+ S D+ G+ S+++ K EG LK E S+DLV L ++I++ L K+VLELGCG
Sbjct: 2 GKVSVVDIVGLSGSEVITPKGEGPLKCCESSIDLVNVLKNEIRDGLLTFRSKQVLELGCG 61
Query: 139 HGLPGIYAILKGAVLVHFQDFNAEVLRCLTIPNVKANLLKESSEEKFTSGS--------- 189
+GLPGI+A LKGA VHFQD +AE++RC TIPNV ANL + GS
Sbjct: 62 YGLPGIFACLKGASTVHFQDPSAEIIRCKTIPNVLANLEHAQDKHGQQQGSPLTPSRQQL 121
Query: 190 ---VGFFAGDWSEIDSLL-----------------------LRGDADLDKSTNSHEND-- 221
+ F+AG+W E+ ++L L G + D S HE
Sbjct: 122 PQDIHFYAGEWEELHTVLSVIQEDEVDTSSGVALEFCEDDFLDGCSSQDASNICHETSSR 181
Query: 222 ------------------TAYNGYDIILMAETVYAVSSLPNLYRLIKKCLRYPGGIVYMA 263
T GYDI+L+ E Y+ SSL NLY L+KKCLR P G++Y+A
Sbjct: 182 RSRKLSGSRAWERGNETTTGDGGYDILLVNEIPYSASSLQNLYLLVKKCLRPPYGVMYLA 241
Query: 264 GKKHYFGVGGGTRHFVRLVTEDGAMQSDLLAEVADGSSNVREVWKLSFK 312
+K+Y G R LV E+GA + L++E + RE+WK FK
Sbjct: 242 ARKNYIGSSSAVRQLRSLVDEEGAFGAHLVSEPPE-----REIWKFFFK 285
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,445,888
Number of extensions: 391498
Number of successful extensions: 579
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 5
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)