BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0347500 Os09g0347500|AK062048
         (350 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0347700  Similar to Sec61p                                   709   0.0  
Os09g0347500  Similar to Protein transport protein Sec61 alp...   709   0.0  
Os03g0213100  Similar to Sec61p                                   708   0.0  
Os03g0692300                                                      403   e-112
Os09g0512000  SecY protein family protein                         295   3e-80
Os09g0512600                                                      227   9e-60
Os12g0627700                                                      162   3e-40
Os12g0612600                                                      159   3e-39
Os12g0625966                                                      122   5e-28
>Os09g0347700 Similar to Sec61p
          Length = 475

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/350 (100%), Positives = 350/350 (100%)

Query: 1   IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 60
           IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF
Sbjct: 126 IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 185

Query: 61  IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV 120
           IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV
Sbjct: 186 IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV 245

Query: 121 TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY 180
           TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY
Sbjct: 246 TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY 305

Query: 181 FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 240
           FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY
Sbjct: 306 FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 365

Query: 241 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 300
           VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG
Sbjct: 366 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 425

Query: 301 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 350
           GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF
Sbjct: 426 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 475
>Os09g0347500 Similar to Protein transport protein Sec61 alpha subunit isoform 2
           (Sec61 alpha- 2)
          Length = 350

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/350 (100%), Positives = 350/350 (100%)

Query: 1   IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 60
           IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF
Sbjct: 1   IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 60

Query: 61  IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV 120
           IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV
Sbjct: 61  IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV 120

Query: 121 TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY 180
           TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY
Sbjct: 121 TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY 180

Query: 181 FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 240
           FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY
Sbjct: 181 FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 240

Query: 241 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 300
           VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG
Sbjct: 241 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 300

Query: 301 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 350
           GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF
Sbjct: 301 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 350
>Os03g0213100 Similar to Sec61p
          Length = 475

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/350 (99%), Positives = 350/350 (100%)

Query: 1   IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 60
           IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF
Sbjct: 126 IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 185

Query: 61  IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV 120
           IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV
Sbjct: 186 IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV 245

Query: 121 TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY 180
           TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY
Sbjct: 246 TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY 305

Query: 181 FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 240
           FISQLLYRRYSGNFLVNL+GKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY
Sbjct: 306 FISQLLYRRYSGNFLVNLIGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 365

Query: 241 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 300
           VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG
Sbjct: 366 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 425

Query: 301 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 350
           GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF
Sbjct: 426 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 475
>Os03g0692300 
          Length = 479

 Score =  403 bits (1035), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/347 (59%), Positives = 259/347 (74%), Gaps = 10/347 (2%)

Query: 1   IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 60
           I  GEA AYVLSG YGSV  LG GNA+L++LQL   G++ I LDELLQKGYG GSGISLF
Sbjct: 135 ITAGEATAYVLSGAYGSVGVLGAGNAVLVVLQLVLGGMVAIFLDELLQKGYGFGSGISLF 194

Query: 61  IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQ----N 116
            A N CE ++ +A SP T++ GRGAEF GAV A  HLL TR  K+ A+REAF+R     +
Sbjct: 195 TAANTCEGVVTRALSPATMDRGRGAEFVGAVTAAAHLLATRARKLSAVREAFFRGGGGGS 254

Query: 117 LPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNA-RGQQG-SYPIKLFYTSNMPIILHSA 174
           LP++  L AT  VFL  +Y QG RV LPVR +NA R  +G +Y ++L YTS MP++L S+
Sbjct: 255 LPDLRGLAATCAVFLAAVYLQGVRVALPVRPRNAPRSHRGGAYSVRLLYTSGMPVVLLSS 314

Query: 175 LITNLYFISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANP 234
            +++LY +SQ LYRR+ G+ LV+LLGKW        +VPVGG+AYYVTAP+S A   ANP
Sbjct: 315 AVSSLYVVSQALYRRFGGSLLVDLLGKWTPDA----AVPVGGIAYYVTAPASAASAAANP 370

Query: 235 FHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIP 294
            HA  YV F+L+ACA  S+ W+ VSGSS++DVA++L+EQQMVMPG RE+++Q+EL RYIP
Sbjct: 371 LHAAMYVAFVLAACAALSRAWVVVSGSSSRDVARRLREQQMVMPGMREASMQRELERYIP 430

Query: 295 TAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKER 341
            AAA GGVC+GALTV AD MGA+GSG G+LLAVT +YQ +E FEKE+
Sbjct: 431 AAAALGGVCVGALTVAADLMGAVGSGAGMLLAVTTVYQCYEAFEKEK 477
>Os09g0512000 SecY protein family protein
          Length = 466

 Score =  295 bits (756), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/336 (47%), Positives = 215/336 (63%), Gaps = 10/336 (2%)

Query: 19  SQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTT 78
           SQ  T N +LI+LQ+  + IIVI LD++L+KGYGL SGISLF ATNIC NI+WKAFSP +
Sbjct: 137 SQHFTVNTVLIMLQILCSDIIVIYLDDVLRKGYGLLSGISLFTATNICVNILWKAFSPMS 196

Query: 79  IN-SGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQ 137
           +    +  EFEGAVIA  HLL+TRTDK+ A+ +AFYRQNLPN+ N LAT L   + I+FQ
Sbjct: 197 VMYPEQSPEFEGAVIAWVHLLMTRTDKLSAMSKAFYRQNLPNIINFLATCLFVPLAIFFQ 256

Query: 138 GFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFLVN 197
           GF +VLPVR++  R  Q    IKL +    P++LH  L+   Y  S++LY++YSGN LVN
Sbjct: 257 GFYIVLPVRTR--RNFQAYCHIKLSHFLYGPVVLHRLLLPLPYVASKVLYKKYSGNTLVN 314

Query: 198 LLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIE 257
           LLGKW    + G S+PVGG+ YY+  P  LAD+  +PFHA  YV F+L +C   S   + 
Sbjct: 315 LLGKWDGLNHFGQSIPVGGIVYYLRTPPILADLHRDPFHAFIYVAFVLISCVFISMGLMV 374

Query: 258 VSGSSA---KDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGVCIGALTVLADFM 314
            + S       V   ++E++ +     +S    E+ R++  AA  GG C G L + AD +
Sbjct: 375 CASSKGVFNGFVVLNMQEERRLRLAQPDSIHANEIRRHVMRAACVGGFCAGVLIIFADLI 434

Query: 315 GAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 350
           G   SGTGI+LAVT  Y Y +     RA+E+G FGF
Sbjct: 435 GVFCSGTGIMLAVTASYPYVDG----RASEVGSFGF 466
>Os09g0512600 
          Length = 213

 Score =  227 bits (579), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 118/222 (53%), Positives = 160/222 (72%), Gaps = 14/222 (6%)

Query: 122 NLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYF 181
            LLAT +V L  ++ +GFRV+LP+RS++ARG+Q + PIKL YTS MP++LHSA +++LY 
Sbjct: 2   GLLATCVVLLATVFLEGFRVMLPLRSRDARGRQLALPIKLLYTSTMPVVLHSAAVSSLYT 61

Query: 182 ISQLL-YRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 240
           +SQLL Y R++G    +LLG WK++ Y+   VPVGG+AYYVT P       A   HA  Y
Sbjct: 62  VSQLLHYSRFAG----SLLGTWKKTGYAAIPVPVGGVAYYVTPP-------AGLSHAAAY 110

Query: 241 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESN--LQKELNRYIPTAAA 298
              +L++C LFS  W+EVS SSA+DVA+QL  Q++ + G RE +  L+  L+RYI TAAA
Sbjct: 111 AASLLASCTLFSGAWVEVSRSSAQDVARQLSVQRLALHGARERDAALRSHLSRYISTAAA 170

Query: 299 FGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 340
            GG+C+GALT+LAD  GAIGSGTGILLA T++Y   + F+KE
Sbjct: 171 LGGLCVGALTILADMTGAIGSGTGILLAATVVYNLIDAFQKE 212
>Os12g0627700 
          Length = 546

 Score =  162 bits (411), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 173/355 (48%), Gaps = 57/355 (16%)

Query: 1   IAIGEAVAYVLSGMY--GSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGIS 58
           +AI  A+   +SG+   G  ++LGT  +++++ QLF  G+I I LDELLQKGYGL SG+S
Sbjct: 110 LAIAMAMVMAVSGVLSAGVAAELGTMASLVVMFQLFLGGMIAIYLDELLQKGYGLLSGVS 169

Query: 59  LFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLP 118
           LF A N C  I WKAF+              A   L H                      
Sbjct: 170 LFAAANCCACIFWKAFT--------------AEDPLLHWA-------------------- 195

Query: 119 NVTNLLATVLVFLIVIYFQGFRVVLP-VRSKNARGQQGSYPIKLFYTSNMPIILHSALIT 177
                 A ++ F +V+  Q   + LP V S +    Q +Y I   Y + +PI+   A  +
Sbjct: 196 ------AIIVFFKLVLQLQSCHITLPAVTSPDDPTLQTTYTISPSYMAYVPILFQPAFFS 249

Query: 178 -NLYFISQLLYRRY-SGNFLVNLLGKWKE-SEYSGHSVPVGGLAYYVTAPSSLADVLANP 234
             L  ISQ L  +Y   N +VNLLGKW++  +Y G+ VPV  +A YVT P S  +++   
Sbjct: 250 FPLVSISQTLSIKYGETNRVVNLLGKWQQMCKYPGYYVPVARIASYVTTPPSFGEIVTGD 309

Query: 235 FHALFYVVFMLSACALFSKTWIEVSGSSAKD-----VAK----QLKEQQMVMPGHRESNL 285
             +L Y VF+L+ CA  S    +V   S+K      V K    +L      +P   ES  
Sbjct: 310 PGSLLYAVFLLTGCAFLSLFCFKVCAKSSKRYLVRLVGKPKQTRLSPDDEQLPDEDESIS 369

Query: 286 QKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 340
            K+  RY+  AA F G C+G L++LA F+G    G  I+LAVT+I+   +   + 
Sbjct: 370 PKQCRRYMTIAAIFVGFCVGFLSLLAGFLGL--DGPAIMLAVTVIHSVVQDHSES 422
>Os12g0612600 
          Length = 483

 Score =  159 bits (402), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 181/337 (53%), Gaps = 24/337 (7%)

Query: 13  GMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLG--SGISLFIATNICENII 70
           GM GS    G GNA L++LQLF  G++V+  D L + GYG+   S  SL IATN CE  +
Sbjct: 148 GMCGSG---GAGNAALVVLQLFAGGVVVVLADLLHETGYGVEGVSAASLLIATNACERAV 204

Query: 71  WKAFSPTTIN-SGRGAEFEGAVIALFHLLITRTDKVR----ALREAFYRQNLPNVTNLLA 125
              FSP  +  +G G EFEG V A+ H +       R    AL     R +LPN++N + 
Sbjct: 205 SHLFSPVKLRLAGAGPEFEGPVFAVTHRVAAAPPSWRHKAGALLFTLLRLDLPNLSNYMT 264

Query: 126 TVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYFISQL 185
           T ++F++ +      +    RS+  RG     PIKL YTS MPI+LH++ ++    +   
Sbjct: 265 TCVMFVLAVRLDETHLRRLYRSRPRRGTDEFVPIKLLYTSAMPIMLHASAVSAFCVLHLH 324

Query: 186 LYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANP---FHALFYVV 242
                 G F+VNLLG+WK++   G + PVGGL YYVT PS L   L +P      L + V
Sbjct: 325 SSGGGGGGFVVNLLGRWKDAG-GGAAYPVGGLVYYVTPPSKL---LVDPGLIHELLIHSV 380

Query: 243 FMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGH-RESNLQKELNRYIPTAAAFGG 301
           F++++C L S  W E S SSA++        +++  G+       + ++R I  AAA GG
Sbjct: 381 FVVASCTLLSMAWAEASRSSAREF-----RTRVIGTGYFVWDETSRRIDRVIAAAAAVGG 435

Query: 302 VCIGALTVLADFMGAIG-SGTGILLAVTIIYQYFETF 337
             +G L V A  +GAIG +G  +L AV +I    ETF
Sbjct: 436 FAVGGLAVYAGAVGAIGEAGPELLFAVLVIKNLAETF 472
>Os12g0625966 
          Length = 425

 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 154/342 (45%), Gaps = 70/342 (20%)

Query: 1   IAIGEAVAYVL--SGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGIS 58
           IAI   VA VL  S + G    + T  A++ + QL   G+I I LD+LL+KGYG  SG+S
Sbjct: 135 IAIVSPVAIVLYASAIAGGTPFITTA-ALVFVFQLIAGGLIAIYLDDLLRKGYGFLSGLS 193

Query: 59  LFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLP 118
           LF A N C  I WKA                                  L  A+      
Sbjct: 194 LFSAANCCACIFWKA----------------------------------LNHAY------ 213

Query: 119 NVTNLLATVLVFLIVIYFQGFRVVL--PVRSKNARGQQGSYPIKLFYTSNMPIILHSALI 176
               +LAT+  FL+V+   G   +   PVRS      + ++ I + Y +  PIIL  AL+
Sbjct: 214 PWMMMLATLAFFLLVLIILGDHHITLPPVRSPADPTLRITHTISVSYLAYAPIILQPALL 273

Query: 177 T-NLYFISQLLYRRY-SGNFLVNLLGKWKE-SEYSGHSVPVGGLAYYVTAPSSLADVLAN 233
           +     ISQ+L  +Y   N +VN+LG WKE  +Y GH  PV G+A Y+T P         
Sbjct: 274 SFPFSSISQMLSIKYGETNKVVNMLGIWKEMRQYPGHYWPVSGIASYITTP--------- 324

Query: 234 PFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYI 293
                      L+ C+   +  + +   + +   +   EQ +      ES   +    Y+
Sbjct: 325 -----------LTVCSRSKRYLVRLLKKTQR--TRVSPEQLLQEHDEDESISPRRCRHYM 371

Query: 294 PTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFE 335
             AA   G+C+G L +LA FMG  GSG  I+LAVT+I+   E
Sbjct: 372 TMAAYIVGICVGLLNLLAGFMGLGGSGPAIMLAVTVIHNLVE 413
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,947,676
Number of extensions: 438642
Number of successful extensions: 1101
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1080
Number of HSP's successfully gapped: 10
Length of query: 350
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 248
Effective length of database: 11,709,973
Effective search space: 2904073304
Effective search space used: 2904073304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)