Os03g0213100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sec61p.
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Os03g0213100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sec61p.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.72 | 0.633 | 9.69 | 0.0893 | 1.34 | 1.3 | 0.433 | -1.54 | -0.237 | 18.4 | 19.38 | 2090 | -- | -- |
| 185.15 | 0.634 | 9.65 | 0.26 | 1.39 | 1.64 | 0.241 | -- | -0.198 | 18.4 | 19.2 | 2519 | -- | -- |
| 182.09 | 0.628 | 9.69 | 0.0822 | 1.35 | 1.33 | -- | -1.5 | -0.233 | 18.4 | 19.28 | 2136 | -- | -- |
| 185.31 | 0.634 | 9.65 | 0.211 | 1.4 | 1.68 | -- | -- | -0.216 | 18.3 | 19.18 | 2528 | -- | -- |
| 276.17 | 0.774 | 9.67 | 0.0231 | -- | 1.43 | -- | -1.39 | -0.282 | -- | 19.4 | 2083 | -- | -- |
| 232.89 | 0.715 | 9.57 | 1.03 | 1.37 | -- | 0.41 | -- | 0.132 | 18.6 | -- | -- | -- | -- |
| 233.31 | 0.715 | 9.57 | 1.02 | 1.37 | -- | -- | -- | 0.133 | 18.6 | -- | -- | -- | -- |
| 279.1 | 0.778 | 9.62 | 0.238 | -- | 1.7 | -- | -- | -0.234 | -- | 19.35 | 2045 | -- | -- |
| 186.1 | 0.635 | 9.66 | -- | 1.4 | 1.79 | -- | -- | -0.255 | 18.3 | 19.2 | 2555 | -- | -- |
| 331.54 | 0.851 | 9.55 | 0.992 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 260.99 | 0.756 | 9.6 | -- | 1.36 | -- | -- | -- | 0.0192 | 18.7 | -- | -- | -- | -- |
| 280.22 | 0.78 | 9.62 | -- | -- | 1.78 | -- | -- | -0.234 | -- | 19.3 | 2095 | -- | -- |
| 357.5 | 0.883 | 9.57 | -- | -- | -- | -- | -- | -0.00457 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 175.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 2 | 175.64 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 4 | 177.52 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 5 | 179.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 14 | 181.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 19 | 182.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 26 | 183.28 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 63 | 184.49 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 75 | 184.92 | humidity | 80 | 14400 | > th | dose dependent | sin | 6 | NA |
| 76 | 184.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 82 | 185.07 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 100 | 185.20 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 103 | 185.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 116 | 185.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 173 | 186.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 179 | 186.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 184 | 186.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 186 | 186.24 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 188 | 186.24 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 191 | 186.27 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 203 | 186.31 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 207 | 186.33 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 215 | 186.37 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 231 | 186.43 | humidity | 90 | 14400 | > th | dose independent | sin | 3 | NA |
| 249 | 186.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 299 | 186.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 316 | 186.98 | humidity | 90 | 14400 | < th | dose independent | sin | 4 | NA |
| 326 | 187.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 385 | 187.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 399 | 187.41 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 505 | 187.90 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 589 | 188.21 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 633 | 188.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 21 |
| 660 | 188.45 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 662 | 188.45 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 721 | 188.71 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 803 | 189.00 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 820 | 189.04 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 8 | NA |
| 824 | 189.05 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 825 | 189.05 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 835 | 189.07 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 842 | 189.09 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 851 | 189.12 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 875 | 189.20 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 906 | 189.31 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 22 |
| 931 | 189.37 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 946 | 189.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |