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Os09g0347500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein transport protein Sec61 alpha subunit isoform 2 (Sec61 alpha- 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.019) R2 : 0.0653
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.226 (0.04) R2dN8 : 0.0843 R2N8 : 0.0653
σ : 0.358
deviance : 58.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.34 0.25 12.2 0.66 0.473 0.562 0.192 0.514 0.309 0.519 45.84 1302 -- --
28.74 0.25 12.2 0.711 0.481 0.599 0.161 -- 0.322 0.556 45.87 1292 -- --
28.49 0.249 12.2 0.658 0.471 0.562 -- 0.462 0.309 0.58 44.99 1305 -- --
28.81 0.25 12.2 0.711 0.477 0.615 -- -- 0.319 0.587 39.91 1295 -- --
37.72 0.286 12.2 0.686 -- 0.559 -- 0.225 0.316 -- 39.33 1606 -- --
36.89 0.285 12.2 0.675 0.388 -- 0.0603 -- 0.296 0.252 -- -- -- --
36.91 0.284 12.2 0.672 0.388 -- -- -- 0.296 0.281 -- -- -- --
37.82 0.286 12.2 0.707 -- 0.591 -- -- 0.325 -- 28.81 1619 -- --
41.26 0.299 12.2 -- 0.396 0.753 -- -- 0.304 0.584 76.45 1441 -- --
46.38 0.318 12.2 0.685 -- -- -- -- 0.302 -- -- -- -- --
48.81 0.327 12.2 -- 0.398 -- -- -- 0.221 0.371 -- -- -- --
49.28 0.327 12.2 -- -- 0.828 -- -- 0.318 -- 73.99 1616 -- --
58.76 0.358 12.2 -- -- -- -- -- 0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.53 humidity 80 1440 < th dose independent rect. 11 2
2 27.63 humidity 80 1440 > th dose independent rect. 11 2
3 27.77 humidity 80 1440 < th dose independent rect. 7 13
5 27.78 humidity 80 1440 < th dose independent rect. 7 7
8 27.83 humidity 80 1440 > th dose independent rect. 7 14
29 28.13 humidity 80 1440 < th dose independent sin 1 NA
37 28.19 humidity 80 1440 > th dose independent rect. 7 7
56 28.31 humidity 80 1440 > th dose independent sin 0 NA
92 28.47 humidity 70 1440 > th dose dependent rect. 11 2
96 28.49 humidity 60 1440 > th dose dependent rect. 18 1
100 28.50 humidity 50 1440 > th dose dependent rect. 7 16
101 28.50 humidity 50 1440 > th dose dependent rect. 5 17
143 28.56 humidity 70 1440 > th dose dependent rect. 7 14
153 28.58 humidity 50 1440 > th dose dependent rect. 15 22
186 28.63 humidity 90 1440 < th dose dependent rect. 15 22
223 28.67 humidity 90 1440 < th dose dependent rect. 6 15
304 28.73 humidity 90 1440 < th dose dependent rect. 18 1
314 28.74 humidity 50 1440 > th dose dependent no NA NA
369 28.78 humidity 80 1440 < th dose independent rect. 17 21
395 28.80 humidity 80 1440 > th dose independent rect. 17 21
433 28.82 humidity 50 1440 > th dose dependent rect. 11 23
444 28.83 humidity 50 1440 > th dose dependent rect. 17 4
467 28.85 humidity 50 1440 > th dose dependent sin 22 NA
499 28.87 humidity 90 1440 < th dose dependent no NA NA
567 28.92 humidity 90 1440 < th dose dependent rect. 9 23
600 28.94 humidity 90 1440 < th dose dependent rect. 11 23
648 28.98 humidity 90 1440 < th dose dependent sin 21 NA
696 29.02 humidity 70 1440 > th dose dependent rect. 7 7
738 29.06 humidity 80 1440 > th dose independent no NA NA
773 29.09 humidity 80 1440 < th dose independent no NA NA
940 29.19 humidity 80 1440 < th dose dependent sin 16 NA
990 29.21 humidity 90 720 > th dose dependent rect. 6 17