BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0347500 Os09g0347500|AK062048
(350 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G34250.1 | chr2:14462635-14464572 FORWARD LENGTH=476 655 0.0
AT1G29310.1 | chr1:10252662-10254526 FORWARD LENGTH=476 655 0.0
AT1G78720.1 | chr1:29605629-29607510 FORWARD LENGTH=476 642 0.0
>AT2G34250.1 | chr2:14462635-14464572 FORWARD LENGTH=476
Length = 475
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/350 (90%), Positives = 339/350 (96%)
Query: 1 IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 60
IAIGEAVAYVLSGMYG V QLG GNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF
Sbjct: 126 IAIGEAVAYVLSGMYGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 185
Query: 61 IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV 120
IATNICE+IIWKAFSPTTIN+GRGAEFEGAVIALFH+LIT+++KV ALR+AFYRQNLPNV
Sbjct: 186 IATNICESIIWKAFSPTTINTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYRQNLPNV 245
Query: 121 TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY 180
TNLLATVL+FLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIIL SAL++NLY
Sbjct: 246 TNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLY 305
Query: 181 FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 240
FISQLLYR++SGNF VNLLG+WKESEYSG S+PV GLAY +TAP+S +D+ A+PFHALFY
Sbjct: 306 FISQLLYRKFSGNFFVNLLGQWKESEYSGQSIPVSGLAYLITAPASFSDMAAHPFHALFY 365
Query: 241 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 300
+VFML+ACALFSKTWIEVSGSSA+DVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG
Sbjct: 366 IVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 425
Query: 301 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 350
GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE+A+ELGFFGF
Sbjct: 426 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF 475
>AT1G29310.1 | chr1:10252662-10254526 FORWARD LENGTH=476
Length = 475
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/350 (90%), Positives = 339/350 (96%)
Query: 1 IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 60
IAIGEAVAYVLSGMYG V QLG GNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF
Sbjct: 126 IAIGEAVAYVLSGMYGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 185
Query: 61 IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV 120
IATNICE+IIWKAFSPTTIN+GRGAEFEGAVIALFH+LIT+++KV ALR+AFYRQNLPNV
Sbjct: 186 IATNICESIIWKAFSPTTINTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYRQNLPNV 245
Query: 121 TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY 180
TNLLATVL+FLIVIYFQGFRVVLPVRSK+ARGQQGSYPIKLFYTSNMPIIL SAL++NLY
Sbjct: 246 TNLLATVLIFLIVIYFQGFRVVLPVRSKSARGQQGSYPIKLFYTSNMPIILQSALVSNLY 305
Query: 181 FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 240
FISQLLYR++SGNF VNLLG+WKESEYSG S+PV GLAY +TAP+S AD+ A+PFHALFY
Sbjct: 306 FISQLLYRKFSGNFFVNLLGQWKESEYSGQSIPVSGLAYLITAPASFADMAAHPFHALFY 365
Query: 241 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 300
+VFML+ACALFSKTWIEVSGSSA+DVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG
Sbjct: 366 IVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 425
Query: 301 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 350
GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE+A+ELGFFGF
Sbjct: 426 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF 475
>AT1G78720.1 | chr1:29605629-29607510 FORWARD LENGTH=476
Length = 475
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/350 (87%), Positives = 337/350 (96%)
Query: 1 IAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLF 60
IA+G+AVAYVLSGMYGSV +LG GNAILII+QL FA IIV+CLDELLQKGYGLGSGISLF
Sbjct: 126 IAVGQAVAYVLSGMYGSVGELGVGNAILIIVQLCFAAIIVLCLDELLQKGYGLGSGISLF 185
Query: 61 IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNV 120
IATNICE+IIWKAFSPTTINSGRGA+FEGAVIALFHLLITRTDKVRALREAF+RQNLPNV
Sbjct: 186 IATNICESIIWKAFSPTTINSGRGAQFEGAVIALFHLLITRTDKVRALREAFFRQNLPNV 245
Query: 121 TNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLY 180
TNL ATVL+FLIVIYFQGFRVVLPVRSKNARGQ+GSYPIKLFYTSNMPIIL SAL++N+Y
Sbjct: 246 TNLHATVLIFLIVIYFQGFRVVLPVRSKNARGQRGSYPIKLFYTSNMPIILQSALVSNIY 305
Query: 181 FISQLLYRRYSGNFLVNLLGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFY 240
FISQ+LYR++ GNFLVNL+G WKESEYSG S+PVGG+AYY+TAPSSLA++ +PFHALFY
Sbjct: 306 FISQILYRKFGGNFLVNLIGTWKESEYSGQSIPVGGIAYYITAPSSLAEMATHPFHALFY 365
Query: 241 VVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFG 300
+VFML+ACALFSKTWIEVSGSSAKDVA+QL+EQQMVMPGHR+SNLQKELNRYIPTAAAFG
Sbjct: 366 LVFMLAACALFSKTWIEVSGSSAKDVARQLREQQMVMPGHRDSNLQKELNRYIPTAAAFG 425
Query: 301 GVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERATELGFFGF 350
G+CIGALTVLAD MGAIGSGTGILLAVTIIYQYFETFEKE+A+ELGFFG
Sbjct: 426 GLCIGALTVLADLMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGL 475
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,129,348
Number of extensions: 289052
Number of successful extensions: 809
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)