Os09g0512000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SecY protein family protein.
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Os09g0512000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SecY protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 388.17 | 0.926 | 2.96 | -0.00528 | 0.257 | 4.26 | -0.393 | -4.88 | -0.243 | 1.43 | 49.9 | 233 | -- | -- |
| 388.73 | 0.918 | 2.94 | 0.0428 | 0.268 | 2.44 | -0.38 | -- | -0.251 | 1.44 | 50.69 | 232 | -- | -- |
| 388.76 | 0.918 | 2.96 | 0.00327 | 0.26 | 4.41 | -- | -4.98 | -0.243 | 1.14 | 49.77 | 232 | -- | -- |
| 389.23 | 0.919 | 2.94 | 0.0692 | 0.259 | 2.46 | -- | -- | -0.243 | 0.988 | 50.56 | 232 | -- | -- |
| 392.8 | 0.923 | 2.95 | 0.024 | -- | 4.6 | -- | -5.91 | -0.23 | -- | 49.64 | 232 | -- | -- |
| 402 | 0.94 | 2.95 | 0.184 | 0.222 | -- | -0.503 | -- | -0.279 | 0.27 | -- | -- | -- | -- |
| 402.64 | 0.94 | 2.95 | 0.206 | 0.241 | -- | -- | -- | -0.274 | 22.8 | -- | -- | -- | -- |
| 393.36 | 0.924 | 2.94 | 0.0859 | -- | 2.33 | -- | -- | -0.24 | -- | 50.52 | 232 | -- | -- |
| 389.35 | 0.919 | 2.94 | -- | 0.261 | 2.51 | -- | -- | -0.25 | 1.04 | 50.57 | 232 | -- | -- |
| 406.23 | 0.942 | 2.95 | 0.211 | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
| 403.76 | 0.94 | 2.96 | -- | 0.243 | -- | -- | -- | -0.297 | 22.8 | -- | -- | -- | -- |
| 393.55 | 0.924 | 2.94 | -- | -- | 2.38 | -- | -- | -0.249 | -- | 50.51 | 232 | -- | -- |
| 407.4 | 0.942 | 2.95 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 376.64 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 15 | 3 |
| 19 | 377.71 | humidity | 50.0 | 10 | < th | dose independent | rect. | 15 | 3 |
| 37 | 379.50 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 76 | 379.63 | humidity | 50.0 | 90 | < th | dose independent | rect. | 14 | 2 |
| 191 | 381.60 | humidity | 50.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 192 | 381.67 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 194 | 381.67 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 197 | 382.15 | wind | 1.0 | 90 | < th | dose independent | rect. | 8 | 2 |
| 199 | 382.18 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 4 |
| 204 | 382.19 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 24 | 5 |
| 209 | 382.35 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 2 |
| 214 | 382.35 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 24 | 2 |
| 224 | 382.54 | humidity | 50.0 | 90 | < th | dose independent | sin | 12 | NA |
| 235 | 382.70 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 238 | 382.70 | wind | 1.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 298 | 383.71 | temperature | 30.0 | 90 | < th | dose independent | rect. | 22 | 23 |
| 303 | 384.07 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 304 | 384.11 | humidity | 50.0 | 90 | > th | dose independent | sin | 12 | NA |
| 310 | 385.22 | wind | 1.0 | 90 | < th | dose dependent | rect. | 8 | 2 |
| 312 | 385.39 | humidity | 90.0 | 90 | > th | dose independent | rect. | 22 | 6 |
| 313 | 385.49 | humidity | 90.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 321 | 385.78 | humidity | 50.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 343 | 385.99 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 358 | 386.19 | humidity | 50.0 | 720 | < th | dose independent | sin | 12 | NA |
| 368 | 386.47 | humidity | 50.0 | 270 | < th | dose dependent | rect. | 12 | 5 |
| 369 | 386.50 | humidity | 50.0 | 270 | < th | dose independent | rect. | 12 | 5 |
| 441 | 387.12 | temperature | 30.0 | 90 | > th | dose independent | rect. | 14 | 5 |
| 457 | 387.15 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 479 | 387.25 | humidity | 90.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 480 | 387.26 | humidity | 50.0 | 720 | > th | dose independent | rect. | 15 | 10 |
| 481 | 387.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 23 |
| 515 | 387.56 | humidity | 50.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 546 | 387.67 | temperature | 30.0 | 90 | > th | dose independent | rect. | 15 | 2 |
| 571 | 387.77 | temperature | 30.0 | 90 | > th | dose independent | rect. | 14 | 21 |
| 599 | 387.88 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 22 | 7 |
| 602 | 387.91 | temperature | 25.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 607 | 387.92 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 656 | 388.08 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 1 |
| 657 | 388.08 | wind | 7.0 | 30 | > th | dose independent | rect. | 20 | 12 |
| 664 | 388.10 | wind | 7.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 668 | 388.10 | humidity | 50.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 680 | 388.15 | wind | 7.0 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 692 | 388.17 | temperature | 20.0 | 30 | > th | dose independent | rect. | 21 | 2 |
| 718 | 388.21 | wind | 7.0 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 720 | 388.22 | humidity | 80.0 | 90 | > th | dose independent | rect. | 21 | 1 |
| 755 | 388.35 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 1 |
| 757 | 388.35 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 805 | 388.49 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 18 | 4 |
| 817 | 388.56 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 18 | 4 |
| 829 | 388.63 | temperature | 15.0 | 10 | > th | dose independent | rect. | 5 | 22 |
| 848 | 388.68 | wind | 3.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 850 | 388.69 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 11 |
| 878 | 388.76 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 880 | 388.76 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 22 | 22 |
| 885 | 388.78 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 894 | 388.80 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 915 | 388.83 | temperature | 30.0 | 90 | < th | dose independent | rect. | 10 | 10 |
| 923 | 388.84 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 14 | 13 |
| 927 | 388.84 | wind | 1.0 | 90 | < th | dose dependent | rect. | 14 | 8 |
| 934 | 388.87 | temperature | 30.0 | 90 | < th | dose independent | sin | 13 | NA |