BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0512000 Os09g0512000|AK101417
(466 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78720.1 | chr1:29605629-29607510 FORWARD LENGTH=476 350 1e-96
AT1G29310.1 | chr1:10252662-10254526 FORWARD LENGTH=476 347 8e-96
AT2G34250.1 | chr2:14462635-14464572 FORWARD LENGTH=476 345 3e-95
>AT1G78720.1 | chr1:29605629-29607510 FORWARD LENGTH=476
Length = 475
Score = 350 bits (897), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 199/466 (42%), Positives = 282/466 (60%), Gaps = 19/466 (4%)
Query: 12 ALVPEVQCPDQPISPRQKFKYTAIVLFIFVTASQVLLYGIQHQPRTIEPDPLHWLHLILA 71
A +PEVQ P++ I R+K YT I LFIF+ SQ+ LYGI T DP +W+ +ILA
Sbjct: 16 AFLPEVQSPERKIPFREKVIYTVISLFIFLVCSQLPLYGIHS---TTGADPFYWMRVILA 72
Query: 72 SSRSTLLSHGIVAILVPEVLVKIWVYLKIITLDTSAPETGVLMNRAQRLLGILVAILGAV 131
SSR T++ GI I+ +++++ KII +D + E L+N AQ+LLGIL+A+ AV
Sbjct: 73 SSRGTVMELGITPIVTSGMVMQLLAGSKIIEIDNNVREDRALLNGAQKLLGILIAVGQAV 132
Query: 132 NFYVRSQHFTV------NTVLIMLQILCSDIIVIYLDDVLRKGYGLLSGISLFTATNICV 185
+ + + +V N +LI++Q+ + IIV+ LD++L+KGYGL SGISLF ATNIC
Sbjct: 133 AYVLSGMYGSVGELGVGNAILIIVQLCFAAIIVLCLDELLQKGYGLGSGISLFIATNICE 192
Query: 186 NILWKAFSPMSVMYPEQSPEFEGAVIAWVHLLMTRTDKLSAMSKAFYRQNLPNIINFLAT 245
+I+WKAFSP ++ + +FEGAVIA HLL+TRTDK+ A+ +AF+RQNLPN+ N AT
Sbjct: 193 SIIWKAFSPTTI-NSGRGAQFEGAVIALFHLLITRTDKVRALREAFFRQNLPNVTNLHAT 251
Query: 246 CLFVPLAIFFQGFYIVLPVRTR--RNFQAYCHIKLSHFLYGXXXXXXXXXXXXXXASKVL 303
L + I+FQGF +VLPVR++ R + IKL + S++L
Sbjct: 252 VLIFLIVIYFQGFRVVLPVRSKNARGQRGSYPIKLFYTSNMPIILQSALVSNIYFISQIL 311
Query: 304 YKKYSGNTLVNLLGKWDGLNHFGQSIPVGGIVYYLRTPPILADLHRDPFHAFIYVAFVLI 363
Y+K+ GN LVNL+G W + GQSIPVGGI YY+ P LA++ PFHA Y+ F+L
Sbjct: 312 YRKFGGNFLVNLIGTWKESEYSGQSIPVGGIAYYITAPSSLAEMATHPFHALFYLVFMLA 371
Query: 364 SCVFISMGLMVCASSKGVFNGFVVLNMQEERRLRLAQPDSIHANEIRRHVMRAACVGGFC 423
+C S + + S V ++E++ + DS E+ R++ AA GG C
Sbjct: 372 ACALFSKTWIEVSGSSA---KDVARQLREQQMVMPGHRDSNLQKELNRYIPTAAAFGGLC 428
Query: 424 AGVLIIFADLIGVFCSGTGIMLAVTASYPYVDG----RASEVGSFG 465
G L + ADL+G SGTGI+LAVT Y Y + +ASE+G FG
Sbjct: 429 IGALTVLADLMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFG 474
>AT1G29310.1 | chr1:10252662-10254526 FORWARD LENGTH=476
Length = 475
Score = 347 bits (890), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 198/467 (42%), Positives = 280/467 (59%), Gaps = 19/467 (4%)
Query: 12 ALVPEVQCPDQPISPRQKFKYTAIVLFIFVTASQVLLYGIQHQPRTIEPDPLHWLHLILA 71
A +PEVQ D+ I R+K YT I LFIF+ SQ+ LYGI T DP +W+ +ILA
Sbjct: 16 AFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHS---TTGADPFYWMRVILA 72
Query: 72 SSRSTLLSHGIVAILVPEVLVKIWVYLKIITLDTSAPETGVLMNRAQRLLGILVAILGAV 131
S+R T++ GI I+ +++++ KII +D + E L+N AQ+LLGIL+AI AV
Sbjct: 73 SNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAV 132
Query: 132 NFYVRSQHFTV------NTVLIMLQILCSDIIVIYLDDVLRKGYGLLSGISLFTATNICV 185
+ + + V N +LI+LQ+ + IIVI LD++L+KGYGL SGISLF ATNIC
Sbjct: 133 AYVLSGMYGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICE 192
Query: 186 NILWKAFSPMSVMYPEQSPEFEGAVIAWVHLLMTRTDKLSAMSKAFYRQNLPNIINFLAT 245
+I+WKAFSP ++ + EFEGAVIA H+L+T+++K++A+ +AFYRQNLPN+ N LAT
Sbjct: 193 SIIWKAFSPTTI-NTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYRQNLPNVTNLLAT 251
Query: 246 CLFVPLAIFFQGFYIVLPVRTR--RNFQAYCHIKLSHFLYGXXXXXXXXXXXXXXASKVL 303
L + I+FQGF +VLPVR++ R Q IKL + S++L
Sbjct: 252 VLIFLIVIYFQGFRVVLPVRSKSARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLL 311
Query: 304 YKKYSGNTLVNLLGKWDGLNHFGQSIPVGGIVYYLRTPPILADLHRDPFHAFIYVAFVLI 363
Y+K+SGN VNLLG+W + GQSIPV G+ Y + P AD+ PFHA Y+ F+L
Sbjct: 312 YRKFSGNFFVNLLGQWKESEYSGQSIPVSGLAYLITAPASFADMAAHPFHALFYIVFMLT 371
Query: 364 SCVFISMGLMVCASSKGVFNGFVVLNMQEERRLRLAQPDSIHANEIRRHVMRAACVGGFC 423
+C S + + S V ++E++ + +S E+ R++ AA GG C
Sbjct: 372 ACALFSKTWIEVSGSSAR---DVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGVC 428
Query: 424 AGVLIIFADLIGVFCSGTGIMLAVTASYPYVDG----RASEVGSFGF 466
G L + AD +G SGTGI+LAVT Y Y + +ASE+G FGF
Sbjct: 429 IGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF 475
>AT2G34250.1 | chr2:14462635-14464572 FORWARD LENGTH=476
Length = 475
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 196/467 (41%), Positives = 280/467 (59%), Gaps = 19/467 (4%)
Query: 12 ALVPEVQCPDQPISPRQKFKYTAIVLFIFVTASQVLLYGIQHQPRTIEPDPLHWLHLILA 71
A +PEVQ D+ + R+K YT I LFIF+ SQ+ LYGI T DP +W+ +ILA
Sbjct: 16 AFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHS---TTGADPFYWMRVILA 72
Query: 72 SSRSTLLSHGIVAILVPEVLVKIWVYLKIITLDTSAPETGVLMNRAQRLLGILVAILGAV 131
S+R T++ GI I+ +++++ KII +D + E L+N AQ+LLGIL+AI AV
Sbjct: 73 SNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAV 132
Query: 132 NFYVRSQHFTV------NTVLIMLQILCSDIIVIYLDDVLRKGYGLLSGISLFTATNICV 185
+ + + V N +LI+LQ+ + IIVI LD++L+KGYGL SGISLF ATNIC
Sbjct: 133 AYVLSGMYGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICE 192
Query: 186 NILWKAFSPMSVMYPEQSPEFEGAVIAWVHLLMTRTDKLSAMSKAFYRQNLPNIINFLAT 245
+I+WKAFSP ++ + EFEGAVIA H+L+T+++K++A+ +AFYRQNLPN+ N LAT
Sbjct: 193 SIIWKAFSPTTI-NTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYRQNLPNVTNLLAT 251
Query: 246 CLFVPLAIFFQGFYIVLPVRTR--RNFQAYCHIKLSHFLYGXXXXXXXXXXXXXXASKVL 303
L + I+FQGF +VLPVR++ R Q IKL + S++L
Sbjct: 252 VLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLL 311
Query: 304 YKKYSGNTLVNLLGKWDGLNHFGQSIPVGGIVYYLRTPPILADLHRDPFHAFIYVAFVLI 363
Y+K+SGN VNLLG+W + GQSIPV G+ Y + P +D+ PFHA Y+ F+L
Sbjct: 312 YRKFSGNFFVNLLGQWKESEYSGQSIPVSGLAYLITAPASFSDMAAHPFHALFYIVFMLT 371
Query: 364 SCVFISMGLMVCASSKGVFNGFVVLNMQEERRLRLAQPDSIHANEIRRHVMRAACVGGFC 423
+C S + + S V ++E++ + +S E+ R++ AA GG C
Sbjct: 372 ACALFSKTWIEVSGSSAR---DVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGVC 428
Query: 424 AGVLIIFADLIGVFCSGTGIMLAVTASYPYVDG----RASEVGSFGF 466
G L + AD +G SGTGI+LAVT Y Y + +ASE+G FGF
Sbjct: 429 IGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF 475
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.143 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,369,025
Number of extensions: 364402
Number of successful extensions: 953
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 938
Number of HSP's successfully gapped: 3
Length of query: 466
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 364
Effective length of database: 8,310,137
Effective search space: 3024889868
Effective search space used: 3024889868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 113 (48.1 bits)