BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0270900 Os09g0270900|AK106363
         (366 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0270900  Fe-S metabolism associated SufE family protein      508   e-144
Os03g0153400  Fe-S metabolism associated SufE family protein      194   1e-49
Os03g0219500  BolA-like protein family protein                    106   2e-23

>Os09g0270900 Fe-S metabolism associated SufE family protein
          Length = 366

 Score =  508 bits (1308), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 263/334 (78%), Positives = 263/334 (78%)

Query: 33  CAPVSFQRLVXXXXXXXXXXXXXXXXXXXXXXXGVDPAQLPPALRDIVALFQSVPDPRTR 92
           CAPVSFQRLV                       GVDPAQLPPALRDIVALFQSVPDPRTR
Sbjct: 33  CAPVSFQRLVARSSASPTPSPSAAAAAAAASGSGVDPAQLPPALRDIVALFQSVPDPRTR 92

Query: 93  YKQLLAYAARLPPMDPALKTDANRVRGCVSQVWVHAAPEEGGAPGRVSFQADSDAQLTKX 152
           YKQLLAYAARLPPMDPALKTDANRVRGCVSQVWVHAAPEEGGAPGRVSFQADSDAQLTK 
Sbjct: 93  YKQLLAYAARLPPMDPALKTDANRVRGCVSQVWVHAAPEEGGAPGRVSFQADSDAQLTKG 152

Query: 153 XXXXXXXXXXXXPARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMLSLMKRKALEVATGE 212
                       PARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMLSLMKRKALEVATGE
Sbjct: 153 LAALLVLGLSGAPARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMLSLMKRKALEVATGE 212

Query: 213 VTTEEIGSQEVVQXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSPQEEQLEEMPADVMEXX 272
           VTTEEIGSQEVVQ                           VHSPQEEQLEEMPADVME  
Sbjct: 213 VTTEEIGSQEVVQEVAERPAAKEKEPEFAAFGAREEEGSEVHSPQEEQLEEMPADVMEGN 272

Query: 273 XXXXXXRQERIKESLERGLSPVQLQIEDISHLHKGHAGVSGSNGETHFNVRVVSEAFQGK 332
                 RQERIKESLERGLSPVQLQIEDISHLHKGHAGVSGSNGETHFNVRVVSEAFQGK
Sbjct: 273 GGLGGGRQERIKESLERGLSPVQLQIEDISHLHKGHAGVSGSNGETHFNVRVVSEAFQGK 332

Query: 333 SLLKRHRAVYDLLQDELKNGLHALSIDAKTPSEV 366
           SLLKRHRAVYDLLQDELKNGLHALSIDAKTPSEV
Sbjct: 333 SLLKRHRAVYDLLQDELKNGLHALSIDAKTPSEV 366



>Os03g0153400 Fe-S metabolism associated SufE family protein
          Length = 232

 Score =  194 bits (492), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 108/136 (79%), Gaps = 1/136 (0%)

Query: 90  RTRYKQLLAYAARLPPMDPALKTDANRVRGCVSQVWVHAAPEEGGAPGRVSFQADSDAQL 149
           R   ++  A  ARLPPMDPALKTDAN +RGCVSQVWVHAAP+EG AP RVSFQADSDAQL
Sbjct: 57  RGWGRRPYAARARLPPMDPALKTDANCIRGCVSQVWVHAAPKEG-APDRVSFQADSDAQL 115

Query: 150 TKXXXXXXXXXXXXXPARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMLSLMKRKALEVA 209
           TK             PARDVAMVPVEFIELLGIRQSLSPSRNSGLLNM+SLMK K LE+ 
Sbjct: 116 TKGLAALLVLGLFDAPARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMISLMKHKVLEIT 175

Query: 210 TGEVTTEEIGSQEVVQ 225
            GEVTTEEIG Q+VVQ
Sbjct: 176 IGEVTTEEIGRQDVVQ 191



>Os03g0219500 BolA-like protein family protein
          Length = 132

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 63/87 (72%)

Query: 279 RQERIKESLERGLSPVQLQIEDISHLHKGHAGVSGSNGETHFNVRVVSEAFQGKSLLKRH 338
           R  R+++ L+  L    L IED+S+ H GHA V  +  ETHFN+RV+S  F+G+SL+KRH
Sbjct: 43  RAARMRQKLQSALEASALDIEDVSYQHAGHAAVKDNANETHFNIRVISPKFEGQSLVKRH 102

Query: 339 RAVYDLLQDELKNGLHALSIDAKTPSE 365
           R VYDLL DEL +GLHA+SI AKTP E
Sbjct: 103 RMVYDLLTDELNSGLHAISIVAKTPKE 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,866,959
Number of extensions: 309968
Number of successful extensions: 658
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 3
Length of query: 366
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 264
Effective length of database: 11,709,973
Effective search space: 3091432872
Effective search space used: 3091432872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)