Os09g0270900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Fe-S metabolism associated SufE family protein.
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Os09g0270900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Fe-S metabolism associated SufE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.17 | 0.436 | 9.34 | 0.0887 | 0.55 | 0.969 | -0.281 | 2.14 | -0.554 | 18.8 | 25.66 | 6 | -- | -- |
| 87.56 | 0.439 | 9.36 | -0.122 | 0.561 | 1.2 | -0.215 | -- | -0.588 | 18.9 | 26.25 | 7 | -- | -- |
| 86.23 | 0.436 | 9.34 | 0.0924 | 0.553 | 0.975 | -- | 2.14 | -0.555 | 18.8 | 25.66 | 3 | -- | -- |
| 87.66 | 0.439 | 9.36 | -0.116 | 0.563 | 1.18 | -- | -- | -0.589 | 18.8 | 26.22 | 4 | -- | -- |
| 99.52 | 0.465 | 9.33 | 0.109 | -- | 1.1 | -- | 2.13 | -0.598 | -- | 24.64 | 114 | -- | -- |
| 106.56 | 0.484 | 9.35 | 0.0425 | 0.823 | -- | 0.548 | -- | -0.552 | 17.1 | -- | -- | -- | -- |
| 107.28 | 0.485 | 9.35 | 0.0424 | 0.828 | -- | -- | -- | -0.55 | 17.2 | -- | -- | -- | -- |
| 100.8 | 0.468 | 9.36 | -0.175 | -- | 1.28 | -- | -- | -0.658 | -- | 24.95 | 121 | -- | -- |
| 88 | 0.439 | 9.36 | -- | 0.57 | 1.15 | -- | -- | -0.576 | 18.7 | 26.22 | 4 | -- | -- |
| 143.14 | 0.559 | 9.34 | 0.0134 | -- | -- | -- | -- | -0.571 | -- | -- | -- | -- | -- |
| 107.33 | 0.485 | 9.35 | -- | 0.827 | -- | -- | -- | -0.555 | 17.2 | -- | -- | -- | -- |
| 101.59 | 0.469 | 9.35 | -- | -- | 1.26 | -- | -- | -0.635 | -- | 25 | 121 | -- | -- |
| 143.14 | 0.558 | 9.34 | -- | -- | -- | -- | -- | -0.572 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.27 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 6 | 78.02 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 7 | 78.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 24 | 79.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 21 |
| 44 | 79.86 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 69 | 80.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 129 | 81.06 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 190 | 81.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 191 | 81.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 197 | 82.08 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 200 | 82.10 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 243 | 82.90 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 247 | 82.99 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 255 | 83.23 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 288 | 84.23 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 320 | 84.61 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 7 |
| 340 | 84.71 | temperature | 30 | 90 | > th | dose independent | sin | 4 | NA |
| 341 | 84.85 | temperature | 30 | 90 | < th | dose independent | sin | 4 | NA |
| 347 | 84.92 | temperature | 30 | 270 | < th | dose independent | sin | 7 | NA |
| 493 | 86.21 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 528 | 86.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 533 | 86.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 534 | 86.41 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 574 | 86.63 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 623 | 86.84 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 630 | 86.85 | atmosphere | 1000 | 10 | < th | dose independent | sin | 23 | NA |
| 805 | 87.43 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 12 |
| 809 | 87.45 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 828 | 87.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 878 | 87.67 | temperature | 10 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 881 | 87.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 904 | 87.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 985 | 88.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 999 | 88.10 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 4 |