BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0270900 Os09g0270900|AK106363
(366 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26500.1 | chr4:13382456-13383571 REVERSE LENGTH=372 228 3e-60
AT1G55805.1 | chr1:20858956-20859438 REVERSE LENGTH=161 108 5e-24
AT1G67810.1 | chr1:25426488-25427264 FORWARD LENGTH=259 68 6e-12
AT5G50210.1 | chr5:20442803-20445706 FORWARD LENGTH=719 65 6e-11
AT5G09830.1 | chr5:3057816-3058769 REVERSE LENGTH=94 58 7e-09
>AT4G26500.1 | chr4:13382456-13383571 REVERSE LENGTH=372
Length = 371
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/299 (44%), Positives = 178/299 (59%), Gaps = 12/299 (4%)
Query: 71 QLPPALRDIVALFQSVPDPRTRYKQLLAYAARLPPMDPALKTDANRVRGCVSQVWVHAAP 130
+LPP L++IV LFQSV +P+ +Y+QL+ Y L P+D KT N+V GCVSQVWV A
Sbjct: 82 ELPPKLQEIVKLFQSVQEPKAKYEQLMFYGKNLTPLDSQFKTRENKVEGCVSQVWVRAFF 141
Query: 131 EEGGAPGRVSFQADSDAQLTKXXXXXXXXXXXXXPARDVAMVPVEFIELLGIRQSLSPSR 190
+E V ++ADSD+ LTK P ++ + +F LLG++QSLSPSR
Sbjct: 142 DE---ERNVVYEADSDSVLTKGLAALLVKGLSGRPVPEILRITPDFAVLLGLQQSLSPSR 198
Query: 191 NSGLLNMLSLMKRKALEVATGEVTTEEIGSQEVVQXXXXXXXXXXXXXXXXXXXXXXXXX 250
N+GLLNML LM++KAL + EV EE S
Sbjct: 199 NNGLLNMLKLMQKKALHL---EVKGEEDSSSGESSESSFVSIPETKDEANVPEVDLESKP 255
Query: 251 XXVHSPQEEQLEEMPADVMEXXXXXXXXRQERIKESLERGLSPVQLQIEDISHLHKGHAG 310
V E++++ + R RI+E LE+ L PV+L++ED+S+ H GHA
Sbjct: 256 DLVEDLGTEKIDDSESG---SNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAA 312
Query: 311 VSGS---NGETHFNVRVVSEAFQGKSLLKRHRAVYDLLQDELKNGLHALSIDAKTPSEV 366
V GS +GETHFN+R+VS+AFQGKSL+KRHR +YDLLQDELK+GLHALSI AKTP+EV
Sbjct: 313 VRGSAGDDGETHFNLRIVSDAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAEV 371
>AT1G55805.1 | chr1:20858956-20859438 REVERSE LENGTH=161
Length = 160
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Query: 279 RQERIKESLERGLSPVQLQIEDISHLHKGHAGVSG-SNGETHFNVRVVSEAFQGKSLLKR 337
R R++E L++ L PV+L IED+S+ H GHAG+ G ++ ETHFNV++VS+ F+G +L+KR
Sbjct: 68 RASRMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSKGFEGMNLVKR 127
Query: 338 HRAVYDLLQDELKNGLHALSIDAKTPSE 365
HR VY LL++EL GLHALSI +KTPSE
Sbjct: 128 HRLVYHLLREELDTGLHALSIVSKTPSE 155
>AT1G67810.1 | chr1:25426488-25427264 FORWARD LENGTH=259
Length = 258
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 76 LRDIVALFQSVPDPRTRYKQLLAYAARLPPMDPALKTDANRVRGCVSQVWVHAAPEEGGA 135
LR +V+ F+S+ +P R K+LL YAA L P+D + + NRV GC +QVW+ +E
Sbjct: 78 LRILVSEFRSLTEPIDRVKRLLNYAATLAPLDESARISENRVTGCTTQVWLEIKMDEF-- 135
Query: 136 PGRVSFQADSDAQLTK 151
GR+ F+ADSD++++K
Sbjct: 136 -GRMRFKADSDSEISK 150
>AT5G50210.1 | chr5:20442803-20445706 FORWARD LENGTH=719
Length = 718
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 72 LPPALRDIVALFQSVPDPRTRYKQLLAYAARLPPMDPALKTDANRVRGCVSQVWVHAAPE 131
+P L+ +V F+S+ +P R K +L YA+ LP M + KT++NRV GC ++VW+ A
Sbjct: 84 VPYKLQRLVKEFKSLTEPIDRLKWVLHYASLLPQMPESSKTESNRVMGCTARVWLDA--- 140
Query: 132 EGGAPGRVSFQADSDAQLTK 151
E G G++ F ADSD+ ++K
Sbjct: 141 ELGQDGKMRFCADSDSDVSK 160
>AT5G09830.1 | chr5:3057816-3058769 REVERSE LENGTH=94
Length = 93
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 13/87 (14%)
Query: 280 QERIKESLERGLSPVQLQIEDISHLHKGHAGVSGSNGETHFNVRVVSEAFQGKSLLKRHR 339
+E+++ SL L P+ L++ DIS G GS+ F V VVSE F+GK LL+RHR
Sbjct: 4 KEQVEASLTSKLKPIHLEVIDIS-------GGCGSS----FEVEVVSEQFEGKRLLERHR 52
Query: 340 AVYDLLQDELKNGLHALSI-DAKTPSE 365
V L++E+K +HALSI A+TP +
Sbjct: 53 MVNAALEEEMKE-IHALSIKKAQTPQQ 78
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,391,756
Number of extensions: 181876
Number of successful extensions: 381
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 6
Length of query: 366
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,364,969
Effective search space: 2225081754
Effective search space used: 2225081754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)