Os03g0153400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Fe-S metabolism associated SufE family protein.
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Os03g0153400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Fe-S metabolism associated SufE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.83 | 0.541 | 8.77 | -0.856 | 1.34 | -0.338 | 0.0816 | -3.89 | 0.0859 | 8.8 | 22.28 | 3299 | -- | -- |
| 139.32 | 0.55 | 8.69 | 0.208 | 1.31 | -0.605 | 0.446 | -- | 0.243 | 8.38 | 27.6 | 4067 | -- | -- |
| 132.84 | 0.537 | 8.77 | -0.847 | 1.34 | -0.343 | -- | -3.88 | 0.0888 | 8.8 | 22.24 | 3322 | -- | -- |
| 136.46 | 0.544 | 8.66 | 0.183 | 1.3 | -0.66 | -- | -- | 0.205 | 8.86 | 28.96 | 4907 | -- | -- |
| 220.86 | 0.692 | 8.71 | -0.136 | -- | -0.866 | -- | -2.11 | 0.294 | -- | 24.4 | 2119 | -- | -- |
| 154.07 | 0.582 | 8.65 | 0.0335 | 1.35 | -- | 0.176 | -- | 0.278 | 8.9 | -- | -- | -- | -- |
| 154.18 | 0.581 | 8.65 | 0.0395 | 1.35 | -- | -- | -- | 0.278 | 8.9 | -- | -- | -- | -- |
| 221.99 | 0.694 | 8.67 | 0.33 | -- | -1.04 | -- | -- | 0.376 | -- | 24.81 | 2140 | -- | -- |
| 137.43 | 0.546 | 8.68 | -- | 1.3 | -0.625 | -- | -- | 0.143 | 8.81 | 29.5 | 4934 | -- | -- |
| 258.56 | 0.751 | 8.69 | 0.0393 | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
| 154.22 | 0.581 | 8.65 | -- | 1.35 | -- | -- | -- | 0.274 | 8.9 | -- | -- | -- | -- |
| 199.14 | 0.657 | 8.67 | -- | -- | -1.42 | -- | -- | 0.386 | -- | 24.4 | 687 | -- | -- |
| 258.6 | 0.751 | 8.69 | -- | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 2 | 125.84 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 6 | 126.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 7 | 126.68 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 8 | 126.68 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 9 | 126.71 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 13 | 126.76 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 21 | 9 |
| 14 | 126.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 16 | 126.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 31 | 127.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 32 | 127.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 35 | 127.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 46 | 127.33 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 77 | 127.74 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 96 | 127.89 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 115 | 128.09 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 117 | 128.12 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 11 | 16 |
| 120 | 128.14 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 121 | 128.14 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 17 |
| 135 | 128.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 142 | 128.24 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 144 | 128.24 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 13 |
| 197 | 128.50 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 234 | 128.56 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 24 | 12 |
| 239 | 128.57 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 255 | 128.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 263 | 128.61 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 15 | NA |
| 264 | 128.61 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 15 | NA |
| 265 | 128.61 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 340 | 128.80 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 375 | 128.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 7 |
| 386 | 128.90 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 445 | 129.06 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 470 | 129.15 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 503 | 129.25 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 512 | 129.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 566 | 129.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 592 | 129.55 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 668 | 129.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 681 | 129.72 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 684 | 129.72 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 706 | 129.76 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 719 | 129.77 | radiation | 10.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 731 | 129.79 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 771 | 129.85 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 20 | 9 |
| 812 | 129.90 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 822 | 129.92 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 5 |
| 892 | 130.01 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 895 | 130.02 | humidity | 70.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 898 | 130.02 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 15 |
| 909 | 130.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 912 | 130.04 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 924 | 130.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 930 | 130.07 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 933 | 130.07 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 952 | 130.07 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 968 | 130.08 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 971 | 130.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 979 | 130.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 23 |
| 990 | 130.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 9 |