BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0153400 Os03g0153400|AK069915
         (232 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0153400  Fe-S metabolism associated SufE family protein      285   3e-77
Os09g0270900  Fe-S metabolism associated SufE family protein      158   4e-39

>Os03g0153400 Fe-S metabolism associated SufE family protein
          Length = 232

 Score =  285 bits (728), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 162/232 (69%), Positives = 162/232 (69%)

Query: 1   PKYLDPISCLLHLFLLSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGCSARRRGWG 60
           PKYLDPISCLLHLFLLSV                              VEGCSARRRGWG
Sbjct: 1   PKYLDPISCLLHLFLLSVADGGRLGGAAGDGDGGGAAGDGDGDDADVGVEGCSARRRGWG 60

Query: 61  XXXXXXXXXXXXMDPALKTDANCIRGCVSQVWVHAAPKEGAPDRVSFQADSDAQLTKGLA 120
                       MDPALKTDANCIRGCVSQVWVHAAPKEGAPDRVSFQADSDAQLTKGLA
Sbjct: 61  RRPYAARARLPPMDPALKTDANCIRGCVSQVWVHAAPKEGAPDRVSFQADSDAQLTKGLA 120

Query: 121 ALLVLGLFDAPARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMISLMKHKVLXXXXXXXX 180
           ALLVLGLFDAPARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMISLMKHKVL        
Sbjct: 121 ALLVLGLFDAPARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMISLMKHKVLEITIGEVT 180

Query: 181 XXXXXRQDXXXXXXXXXXXXXXXMPSRAAAAIPVPSRAGATHHWQWRGVRDI 232
                RQD               MPSRAAAAIPVPSRAGATHHWQWRGVRDI
Sbjct: 181 TEEIGRQDVVQEVAEPPAAVTVPMPSRAAAAIPVPSRAGATHHWQWRGVRDI 232



>Os09g0270900 Fe-S metabolism associated SufE family protein
          Length = 366

 Score =  158 bits (399), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 94/101 (93%), Gaps = 1/101 (0%)

Query: 73  MDPALKTDANCIRGCVSQVWVHAAPKEG-APDRVSFQADSDAQLTKGLAALLVLGLFDAP 131
           MDPALKTDAN +RGCVSQVWVHAAP+EG AP RVSFQADSDAQLTKGLAALLVLGL  AP
Sbjct: 106 MDPALKTDANRVRGCVSQVWVHAAPEEGGAPGRVSFQADSDAQLTKGLAALLVLGLSGAP 165

Query: 132 ARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMISLMKHKVL 172
           ARDVAMVPVEFIELLGIRQSLSPSRNSGLLNM+SLMK K L
Sbjct: 166 ARDVAMVPVEFIELLGIRQSLSPSRNSGLLNMLSLMKRKAL 206



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,562,331
Number of extensions: 159841
Number of successful extensions: 357
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)