BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0153400 Os03g0153400|AK069915
         (232 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26500.1  | chr4:13382456-13383571 REVERSE LENGTH=372           99   3e-21

>AT4G26500.1 | chr4:13382456-13383571 REVERSE LENGTH=372
          Length = 371

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 67/100 (67%), Gaps = 2/100 (2%)

Query: 73  MDPALKTDANCIRGCVSQVWVHAAPKEGAPDRVSFQADSDAQLTKGLAALLVLGLFDAPA 132
           +D   KT  N + GCVSQVWV A   E     V ++ADSD+ LTKGLAALLV GL   P 
Sbjct: 117 LDSQFKTRENKVEGCVSQVWVRAFFDEER--NVVYEADSDSVLTKGLAALLVKGLSGRPV 174

Query: 133 RDVAMVPVEFIELLGIRQSLSPSRNSGLLNMISLMKHKVL 172
            ++  +  +F  LLG++QSLSPSRN+GLLNM+ LM+ K L
Sbjct: 175 PEILRITPDFAVLLGLQQSLSPSRNNGLLNMLKLMQKKAL 214



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,229,594
Number of extensions: 83156
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)