Os03g0219500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BolA-like protein family protein.
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Os03g0219500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BolA-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.94 | 0.415 | 7.83 | -1.73 | 0.512 | 2.38 | 0.463 | 2.16 | -0.587 | 12.6 | 26.3 | 117 | -- | -- |
| 83.64 | 0.426 | 7.82 | -1.33 | 0.519 | 2.28 | -0.0481 | -- | -0.525 | 12.9 | 27.09 | 122 | -- | -- |
| 78.64 | 0.413 | 7.83 | -1.67 | 0.512 | 2.36 | -- | 1.85 | -0.578 | 12.4 | 26.27 | 115 | -- | -- |
| 83.15 | 0.425 | 7.79 | -1.36 | 0.542 | 2.24 | -- | -- | -0.51 | 12.6 | 27.1 | 104 | -- | -- |
| 86.64 | 0.434 | 7.85 | -1.77 | -- | 2.2 | -- | 2.18 | -0.633 | -- | 25.73 | 300 | -- | -- |
| 153.55 | 0.581 | 7.9 | -1.92 | 0.341 | -- | -0.324 | -- | -0.998 | 7.1 | -- | -- | -- | -- |
| 153.83 | 0.581 | 7.9 | -1.93 | 0.341 | -- | -- | -- | -0.997 | 7.01 | -- | -- | -- | -- |
| 92.36 | 0.448 | 7.82 | -1.41 | -- | 2.05 | -- | -- | -0.553 | -- | 26.26 | 300 | -- | -- |
| 126.83 | 0.525 | 7.73 | -- | 0.723 | 2.84 | -- | -- | -0.247 | 13.2 | 27.37 | 103 | -- | -- |
| 159.94 | 0.591 | 7.91 | -1.92 | -- | -- | -- | -- | -0.991 | -- | -- | -- | -- | -- |
| 251.95 | 0.743 | 7.85 | -- | 0.321 | -- | -- | -- | -0.782 | 7.39 | -- | -- | -- | -- |
| 140.12 | 0.551 | 7.75 | -- | -- | 2.54 | -- | -- | -0.303 | -- | 26.18 | 323 | -- | -- |
| 257.45 | 0.749 | 7.86 | -- | -- | -- | -- | -- | -0.777 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.36 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 3 | 81.03 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 4 | 81.07 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 5 | 81.17 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 6 | 81.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 10 | 81.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 16 | 82.00 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 27 | 82.41 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 28 | 82.57 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 32 | 82.68 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 58 | 83.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 202 | 86.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 228 | 87.34 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 247 | 87.58 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 18 |
| 322 | 88.96 | temperature | 25 | 270 | < th | dose dependent | sin | 18 | NA |
| 486 | 90.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 491 | 90.93 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 504 | 91.10 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 505 | 91.11 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 560 | 91.65 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 577 | 91.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 606 | 91.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 612 | 92.05 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 708 | 92.71 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 743 | 92.90 | temperature | 15 | 90 | > th | dose dependent | sin | 12 | NA |
| 841 | 93.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 844 | 93.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 871 | 93.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 893 | 93.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 900 | 93.83 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 941 | 94.00 | temperature | 15 | 10 | > th | dose dependent | sin | 13 | NA |
| 959 | 94.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 965 | 94.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 16 |