BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0219500 Os03g0219500|AK059646
         (132 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0219500  BolA-like protein family protein                    246   3e-66
Os09g0270900  Fe-S metabolism associated SufE family protein      107   3e-24

>Os03g0219500 BolA-like protein family protein
          Length = 132

 Score =  246 bits (629), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 12  GREYAGAGKRIAAVRRTVSMMSSRGTSAMLSRAARMRQKLQSALEASALDIEDVSYQHAG 71
           GREYAGAGKRIAAVRRTVSMMSSRGTSAMLSRAARMRQKLQSALEASALDIEDVSYQHAG
Sbjct: 12  GREYAGAGKRIAAVRRTVSMMSSRGTSAMLSRAARMRQKLQSALEASALDIEDVSYQHAG 71

Query: 72  HAAVKDNANETHFNIRVISPKFEGQSLVKRHRMVYDLLTDELNSGLHAISIVAKTPKESG 131
           HAAVKDNANETHFNIRVISPKFEGQSLVKRHRMVYDLLTDELNSGLHAISIVAKTPKESG
Sbjct: 72  HAAVKDNANETHFNIRVISPKFEGQSLVKRHRMVYDLLTDELNSGLHAISIVAKTPKESG 131

Query: 132 S 132
           S
Sbjct: 132 S 132



>Os09g0270900 Fe-S metabolism associated SufE family protein
          Length = 366

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 63/87 (72%)

Query: 43  RAARMRQKLQSALEASALDIEDVSYQHAGHAAVKDNANETHFNIRVISPKFEGQSLVKRH 102
           R  R+++ L+  L    L IED+S+ H GHA V  +  ETHFN+RV+S  F+G+SL+KRH
Sbjct: 279 RQERIKESLERGLSPVQLQIEDISHLHKGHAGVSGSNGETHFNVRVVSEAFQGKSLLKRH 338

Query: 103 RMVYDLLTDELNSGLHAISIVAKTPKE 129
           R VYDLL DEL +GLHA+SI AKTP E
Sbjct: 339 RAVYDLLQDELKNGLHALSIDAKTPSE 365



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.126    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,364,101
Number of extensions: 105498
Number of successful extensions: 268
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 2
Length of query: 132
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 42
Effective length of database: 12,336,541
Effective search space: 518134722
Effective search space used: 518134722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)