BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0219500 Os03g0219500|AK059646
(132 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26500.1 | chr4:13382456-13383571 REVERSE LENGTH=372 126 3e-30
AT1G55805.1 | chr1:20858956-20859438 REVERSE LENGTH=161 124 1e-29
AT5G17560.1 | chr5:5788474-5789671 FORWARD LENGTH=178 50 4e-07
>AT4G26500.1 | chr4:13382456-13383571 REVERSE LENGTH=372
Length = 371
Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 3/100 (3%)
Query: 33 SSRGTSAMLSRAARMRQKLQSALEASALDIEDVSYQHAGHAAVKDNAN---ETHFNIRVI 89
S A+ SR R+R+KL+ L+ L++EDVSYQHAGHAAV+ +A ETHFN+R++
Sbjct: 271 SGSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIV 330
Query: 90 SPKFEGQSLVKRHRMVYDLLTDELNSGLHAISIVAKTPKE 129
S F+G+SLVKRHR++YDLL DEL SGLHA+SIVAKTP E
Sbjct: 331 SDAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAE 370
>AT1G55805.1 | chr1:20858956-20859438 REVERSE LENGTH=161
Length = 160
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 83/118 (70%), Gaps = 3/118 (2%)
Query: 16 AGAGKRIAAVRRTVSMMSSRGTSAMLSRAARMRQKLQSALEASALDIEDVSYQHAGHAAV 75
G G R A+ S G A+ +RA+RMR+KLQ LE L IEDVSYQHAGHA +
Sbjct: 43 TGTGSRSVAMSSVEKTGSDSG--AIENRASRMREKLQKELEPVELVIEDVSYQHAGHAGM 100
Query: 76 KDNAN-ETHFNIRVISPKFEGQSLVKRHRMVYDLLTDELNSGLHAISIVAKTPKESGS 132
K + ETHFN++++S FEG +LVKRHR+VY LL +EL++GLHA+SIV+KTP ES S
Sbjct: 101 KGRTDDETHFNVKIVSKGFEGMNLVKRHRLVYHLLREELDTGLHALSIVSKTPSESPS 158
>AT5G17560.1 | chr5:5788474-5789671 FORWARD LENGTH=178
Length = 177
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 47 MRQKLQSALEASALDIEDVSYQHAGHAAVKDNANETHFNIRVISPKFEGQSLVKRHRMVY 106
M K++ L A ++ + D+S + H I V+S FEGQS V R RMVY
Sbjct: 105 MELKIKEQLNAESVTVTDMS------------GDGRHVCINVVSSAFEGQSAVNRQRMVY 152
Query: 107 DLLTDELNSGLHAI-SIVAKTPKE 129
+ +EL + +HA+ + KTP E
Sbjct: 153 KAIWEELQNVVHAVDQMTTKTPSE 176
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.126 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,099,878
Number of extensions: 66850
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 3
Length of query: 132
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 45
Effective length of database: 8,721,377
Effective search space: 392461965
Effective search space used: 392461965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)