BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0133800 Os09g0133800|AK069372
(661 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0133800 Conserved hypothetical protein 1320 0.0
Os12g0612300 Conserved hypothetical protein 144 2e-34
Os07g0147800 Conserved hypothetical protein 91 2e-18
>Os09g0133800 Conserved hypothetical protein
Length = 661
Score = 1320 bits (3417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/661 (97%), Positives = 646/661 (97%)
Query: 1 MAESLETLDVPLAHSDMNGSSTVQGEPSDENELIVDDLDAIWNELNTSLHVSRYVTDSVM 60
MAESLETLDVPLAHSDMNGSSTVQGEPSDENELIVDDLDAIWNELNTSLHVSRYVTDSVM
Sbjct: 1 MAESLETLDVPLAHSDMNGSSTVQGEPSDENELIVDDLDAIWNELNTSLHVSRYVTDSVM 60
Query: 61 KGTISAVEQESARQIASKDAEIAFLNEKLHQFRNSGLSLSEGRDKLYEEIYNLRQQLVTL 120
KGTISAVEQESARQIASKDAEIAFLNEKLHQFRNSGLSLSEGRDKLYEEIYNLRQQLVTL
Sbjct: 61 KGTISAVEQESARQIASKDAEIAFLNEKLHQFRNSGLSLSEGRDKLYEEIYNLRQQLVTL 120
Query: 121 SKSLLNSEWGLSVSHYNNFEGAEDESKHRGNEKSSKDGITKENGSKGSNEDIFIDPTVLK 180
SKSLLNSEWGLSVSHYNNFEGAEDESKHRGNEKSSKDGITKENGSKGSNEDIFIDPTVLK
Sbjct: 121 SKSLLNSEWGLSVSHYNNFEGAEDESKHRGNEKSSKDGITKENGSKGSNEDIFIDPTVLK 180
Query: 181 HMDRDELVAHFNKMMNQMKRQHDSTLQEKTEEIFRLKRENLKKEGPNPWHLRNNKEFELM 240
HMDRDELVAHFNKMMNQMKRQHDSTLQEKTEEIFRLKRENLKKEGPNPWHLRNNKEFELM
Sbjct: 181 HMDRDELVAHFNKMMNQMKRQHDSTLQEKTEEIFRLKRENLKKEGPNPWHLRNNKEFELM 240
Query: 241 RKKIWEVITKLDEVLVENKRTIRIKSDVFPGQQDKIKVVDSHNHQLQGAPTDNEEEECTT 300
RKKIWEVITKLDEVLVENKRTIRIKSDVFPGQQDKIKVVDSHNHQLQGAPTDNEEEECTT
Sbjct: 241 RKKIWEVITKLDEVLVENKRTIRIKSDVFPGQQDKIKVVDSHNHQLQGAPTDNEEEECTT 300
Query: 301 LIKASHFTPIETNYLNQIRRLESDIEDASIVTIVREETEKILVTEFISEIKMGLHGYEME 360
LIKASHFTPIETNYLNQIRRLESDIEDASIVTIVREETEKILVTEFISEIKMGLHGYEME
Sbjct: 301 LIKASHFTPIETNYLNQIRRLESDIEDASIVTIVREETEKILVTEFISEIKMGLHGYEME 360
Query: 361 FNMNLDFWSIIQKEAIAEAASNINSFLLKYSEENSCAEAQSLHMQEMDKLKLNVDTFNLV 420
FNMNLDFWSIIQKEAIAEAASNINSFLLKYSEENSCAEAQSLHMQEMDKLKLNVDTFNLV
Sbjct: 361 FNMNLDFWSIIQKEAIAEAASNINSFLLKYSEENSCAEAQSLHMQEMDKLKLNVDTFNLV 420
Query: 421 IREKEEYLSQIEFKAIEDHLDFLRHELDSLRGKVAKQDSGISDKCRDFDVIVSRLEQALQ 480
IREKEEYLSQIEFKAIEDHLDFLRHELDSLRGKVAKQDSGISDKCRDFDVIVSRLEQALQ
Sbjct: 421 IREKEEYLSQIEFKAIEDHLDFLRHELDSLRGKVAKQDSGISDKCRDFDVIVSRLEQALQ 480
Query: 481 HVHRNEIALKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRC 540
HVHRNEIALKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRC
Sbjct: 481 HVHRNEIALKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRC 540
Query: 541 VVESMRGFEKLVTDQQTIIAHKVQHNESRFSLLKEQCKILAKEGNTLRKKALRYKEISET 600
VVESMRGFEKLVTDQQTIIAHKVQHNESRFSLLKEQCKILAKEGNTLRKKALRYKEISET
Sbjct: 541 VVESMRGFEKLVTDQQTIIAHKVQHNESRFSLLKEQCKILAKEGNTLRKKALRYKEISET 600
Query: 601 RASNLQKXXXXXXXXXXXXXXXTDLLAKIYIALDHYSPVLQYYTGVMEILNMIKKHLNMS 660
RASNLQK TDLLAKIYIALDHYSPVLQYYTGVMEILNMIKKHLNMS
Sbjct: 601 RASNLQKAELEVDLLGDEVEALTDLLAKIYIALDHYSPVLQYYTGVMEILNMIKKHLNMS 660
Query: 661 K 661
K
Sbjct: 661 K 661
>Os12g0612300 Conserved hypothetical protein
Length = 579
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 154/571 (26%), Positives = 261/571 (45%), Gaps = 75/571 (13%)
Query: 110 IYNLRQQLVTLSKSLLNSEWGLSVSHYN-------NFEGAEDESKHRGNEKSSKDGITKE 162
I LR +L T+ + SE G+ SH + NF +D+++ E+++ G
Sbjct: 56 IAALRDELSTIYSVVSASESGVFSSHGSHEKVEELNFLKMKDDNESSITERTTDSG---- 111
Query: 163 NGSKGSNEDIFIDP--TVLKHMDRDELVAHFNKMMNQMKRQHDSTLQEKTEEIFRLKREN 220
E +F P ++LKHM +E+ +++RQH+S L EKTEE+FRLKRE
Sbjct: 112 -------ELMFDIPDFSLLKHMPSEEVTNFLKSEWLKLRRQHESELHEKTEELFRLKREF 164
Query: 221 LKKEGPNPWHLRNNKEFELMRKKIWEVITKLDEVLV--ENKRTIRIKSDVFPGQQDKIKV 278
K P R +E E+++ K+ + I+KLDE+ + +N G +D+I
Sbjct: 165 AKDIALLPS--RKERELEIIKSKLLQSISKLDEITLREDNPYCDNYDDAEVCGFEDRIGS 222
Query: 279 VDSHNHQLQGAPTDNE--EEECTTLI-----KASHFTPIETNYLNQIRRLESDIEDASIV 331
+ N QLQG D + + + + K + + E + Q+ +L ++ED I
Sbjct: 223 LLHENEQLQGLLADKKMVAKHLSLQVLDAERKMAQHSLSELKLVKQVEKLSHELEDLKIE 282
Query: 332 TIVREETEKILVTEFISEIKMGLHGYEMEFNMNLDFWSIIQKEAIAEAASNINSFL---- 387
+ +++ E +S ++ YE + + + +E + E ++
Sbjct: 283 SHIKDLLE-------LSTLREVFDNYENHID-DANQEETFLRELLIEKEEQLSIMYEDRQ 334
Query: 388 -LKYSEENSCAEAQSLHMQEMDKLKLNVDTFNLVIREKEEYLSQIEFKAIEDHLDFLRHE 446
LKY A A S MQ +++ NLV ++
Sbjct: 335 KLKYENNQLVAIAGSTLMQHHEQV-------NLV------------------------ND 363
Query: 447 LDSLRGKVAKQDSGISDKCRDFDVIVSRLEQALQHVHRNEIALKELNDRFRTVSDSQKEV 506
L + R KV +Q+ I + + + + S L +ALQ ++ + + L D +S + +E
Sbjct: 364 LTNFREKVCEQELLILESKSESNSMKSSLYEALQQINVCKQEIHGLTDNLTAMSIALEEA 423
Query: 507 EKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRCVVESMRGFEKLVTDQQTIIAHKVQHN 566
++QN L A I+E +K + SI+ K + + SM K +D ++ +A ++ N
Sbjct: 424 KEQNASLDATIQEMKKTSAPSINSHKGQAGHLEYALVSMEKLSKSYSDFESRLAQSMKRN 483
Query: 567 ESRFSLLKEQCKILAKEGNTLRKKALRYKEISETRASNLQKXXXXXXXXXXXXXXXTDLL 626
E R + + Q L ++ L+KK YK+I E + SNLQK +L
Sbjct: 484 EIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSNLQKAEAEVDILGDEVDALLSIL 543
Query: 627 AKIYIALDHYSPVLQYYTGVMEILNMIKKHL 657
KIYIALDHYSPVL++Y GV EILN+++K L
Sbjct: 544 GKIYIALDHYSPVLKHYPGVTEILNLVQKAL 574
>Os07g0147800 Conserved hypothetical protein
Length = 780
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 118/503 (23%), Positives = 218/503 (43%), Gaps = 105/503 (20%)
Query: 179 LKHMDRDELVAHFNKMMNQMKRQHDSTLQEKTEEIFRLKRENLKKEGPNPWHLRNNKEFE 238
LK M+R+E++ +F ++++KR H+ +LQEKTEE+F+ KRE L+ + EFE
Sbjct: 326 LKGMNREEMIKYFRFEISKLKRLHELSLQEKTEELFKFKREK------GSLALKYDPEFE 379
Query: 239 LMRKKIWEVITKLDEVLV-----------------ENKRTIRIKSDVFPGQQ------DK 275
+RKK+ E+I+++D++++ + T RI S + Q +K
Sbjct: 380 PLRKKVPEIISRVDQIILNTINAPTAFSTNQVLEERGRLTGRIDSLYYANQNLRGLLAEK 439
Query: 276 IKVVDSHNHQLQGAPTDNEEEECTTLIKASHFTPIETNYLNQIRRLESDIEDASIVTIVR 335
+K + + Q+ A K S +E Q+ +++ D ED I + +R
Sbjct: 440 MKDIKDLSRQVSDASR-----------KMSFQLSLEEKLSRQLHKIKGDYEDLHIQSTIR 488
Query: 336 EETEKILVTEFISEIKMGLHGYEMEFNMNLDFWSIIQKEAIAEAASNINSFLLKYSEENS 395
+E + + + + L + + +K EAA + L+ + E +
Sbjct: 489 DEVYQTVTKRMFDDYRNSLQDPALTYQ---------EKVTSLEAALSEKETALRLANEEN 539
Query: 396 CAEAQSLHMQEMD-KLKLNVDTFNLVIREKEEY-LSQIEFKAIEDHLDFLRHELDSLRGK 453
+ L QE + ++ N D L+ ++ EE L IE +E H+
Sbjct: 540 QRLKEKLSKQEKEHGIQNNQDYPELIKQDNEEMILRDIE---MEPHVS------------ 584
Query: 454 VAKQDSGISDKCRDFDVIVSRLEQALQHVHRNEIALKELNDRFRTVSDSQKEVEKQNKVL 513
++ IS++ +++ ++ +L+Q L EIA S + KEVE
Sbjct: 585 -PRRSYAISEQNAEYEELI-KLKQTL------EIA-----------STALKEVESNELDY 625
Query: 514 HAIIKEKEKGFSSSISKEKEFTECMRCVVESMRGFEKLVTDQQTIIAHKVQHNESRFSLL 573
+ I+ + E+ K+ EF ++ S+ K + ++ ++ +E +L
Sbjct: 626 NGILGKNEQ------EKQLEF------ILVSIMDLSKEFVQIENKMSGDMKGSEKGPEIL 673
Query: 574 KEQCKILAKEGNTLRKKALRYKEISETRASNLQKXXXXXXXXXXXX--------XXXTDL 625
QCK + ++ L KK L YK++ +TR S L+K L
Sbjct: 674 GYQCKHMVQQALVLTKKGLWYKQMLDTRRSQLRKAEAEESIKVSKMVDVLGNKVSTLLSL 733
Query: 626 LAKIYIALDHYSPVLQYYTGVME 648
+ KIY+ L+HYSPV Q Y G+++
Sbjct: 734 VQKIYVTLEHYSPVFQQYPGLLD 756
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,979,287
Number of extensions: 750351
Number of successful extensions: 2050
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2044
Number of HSP's successfully gapped: 5
Length of query: 661
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 554
Effective length of database: 11,448,903
Effective search space: 6342692262
Effective search space used: 6342692262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)