BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0128400 Os09g0128400|AK103118
         (221 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0128400  Conserved hypothetical protein                      454   e-128
Os06g0186600  Conserved hypothetical protein                      249   1e-66
Os02g0793800  Conserved hypothetical protein                      219   2e-57

>Os09g0128400 Conserved hypothetical protein
          Length = 221

 Score =  454 bits (1167), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MVHLPHQGKLRRDVKEEALDDGDAAAQAEASPFHKRSRLALQHWSTDGGSVSNQQSSQHG 60
           MVHLPHQGKLRRDVKEEALDDGDAAAQAEASPFHKRSRLALQHWSTDGGSVSNQQSSQHG
Sbjct: 1   MVHLPHQGKLRRDVKEEALDDGDAAAQAEASPFHKRSRLALQHWSTDGGSVSNQQSSQHG 60

Query: 61  FLDEPSPLGLRLKKSPSLVDLIQMKLVQAGKAKDVQHSGTASASEKLKASNFPGSVLRIG 120
           FLDEPSPLGLRLKKSPSLVDLIQMKLVQAGKAKDVQHSGTASASEKLKASNFPGSVLRIG
Sbjct: 61  FLDEPSPLGLRLKKSPSLVDLIQMKLVQAGKAKDVQHSGTASASEKLKASNFPGSVLRIG 120

Query: 121 SWEWVSRYEGDLVAKCYFAKHKLVWEVLDGGLKSKIEIQWSDICAMKVVSPENEPGILEI 180
           SWEWVSRYEGDLVAKCYFAKHKLVWEVLDGGLKSKIEIQWSDICAMKVVSPENEPGILEI
Sbjct: 121 SWEWVSRYEGDLVAKCYFAKHKLVWEVLDGGLKSKIEIQWSDICAMKVVSPENEPGILEI 180

Query: 181 ALSRQPLFFRETNPQPRKHTLWQATSDFTGGQASIHSARQE 221
           ALSRQPLFFRETNPQPRKHTLWQATSDFTGGQASIHSARQE
Sbjct: 181 ALSRQPLFFRETNPQPRKHTLWQATSDFTGGQASIHSARQE 221



>Os06g0186600 Conserved hypothetical protein
          Length = 472

 Score =  249 bits (636), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/174 (68%), Positives = 141/174 (81%), Gaps = 17/174 (9%)

Query: 59  HGFLDEPSPLGLRLKKSPSLVDLIQMKLVQAG----------------KAKDVQHSGTAS 102
           H  LDEPSPLGLRL+KSPSL+DLIQM+L QA                 K KD++ SGT++
Sbjct: 3   HNVLDEPSPLGLRLRKSPSLLDLIQMRLSQANSTAGQSSADDCSSEPPKKKDLK-SGTST 61

Query: 103 ASEKLKASNFPGSVLRIGSWEWVSRYEGDLVAKCYFAKHKLVWEVLDGGLKSKIEIQWSD 162
           A E+LKASNFP ++LRIG+WE++SRYEGDLVAKCYFAKHKLVWEVL+GGLKSKIEIQWSD
Sbjct: 62  AGERLKASNFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEGGLKSKIEIQWSD 121

Query: 163 ICAMKVVSPENEPGILEIALSRQPLFFRETNPQPRKHTLWQATSDFTGGQASIH 216
           I A+K   PEN  G L++ L+R PLFF+ET+PQPRKHTLWQATSDFTGGQAS++
Sbjct: 122 ITALKASCPENGQGTLDVVLARPPLFFKETDPQPRKHTLWQATSDFTGGQASMN 175



>Os02g0793800 Conserved hypothetical protein
          Length = 492

 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 130/184 (70%), Gaps = 6/184 (3%)

Query: 32  PFHKRSRLALQHWSTDGGSVSNQQSSQHGFLDEPSPLGLRLKKSPSLVDLIQMKLVQAGK 91
           P HKR +  LQ       S+ +        LD  SPLGLRL+KSPSL++LIQMKL     
Sbjct: 39  PLHKRVKEELQ-LQPPPPSLQDMH-----ILDGSSPLGLRLRKSPSLLELIQMKLAMENT 92

Query: 92  AKDVQHSGTASASEKLKASNFPGSVLRIGSWEWVSRYEGDLVAKCYFAKHKLVWEVLDGG 151
            K+   S +  ASE++KASNF    L+IG+WE  S+YEGDLVAKCYFAKHKLVWEVLD G
Sbjct: 93  KKEDIKSRSLIASERVKASNFAADFLKIGTWECTSQYEGDLVAKCYFAKHKLVWEVLDAG 152

Query: 152 LKSKIEIQWSDICAMKVVSPENEPGILEIALSRQPLFFRETNPQPRKHTLWQATSDFTGG 211
           LK KIEIQWSDI A+K   PEN  G L++ L+R P FF+ET+PQPRKHTLWQ  SDFTGG
Sbjct: 153 LKRKIEIQWSDIIALKATCPENGIGTLDLVLARPPTFFKETDPQPRKHTLWQVASDFTGG 212

Query: 212 QASI 215
           QASI
Sbjct: 213 QASI 216



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,546,516
Number of extensions: 357682
Number of successful extensions: 876
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 124
Effective length of database: 11,971,043
Effective search space: 1484409332
Effective search space used: 1484409332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)