Os02g0793800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0793800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 333.46 | 0.858 | 5.27 | 1.5 | 2.31 | 2.73 | -0.229 | 11.5 | 0.42 | 16.6 | 102.9 | 4320 | 17 | 13 |
| 534.13 | 1.08 | 5.29 | 1.97 | 2.31 | 2.79 | -0.0862 | -- | 0.447 | 16.8 | 44.1 | 4319 | 17 | 13.6 |
| 331.88 | 0.848 | 5.27 | 1.5 | 2.31 | 2.73 | -- | 11.5 | 0.42 | 16.5 | 165.5 | 4320 | 17 | 13 |
| 505.79 | 1.05 | 5.31 | 2.01 | 2.13 | 2.55 | -- | -- | 0.537 | 16.8 | 37.51 | 11506 | 17 | 13.6 |
| 613.7 | 1.15 | 5.25 | 1.22 | -- | 3.07 | -- | 12 | 0.346 | -- | 163.6 | 4319 | 17 | 13 |
| 570.34 | 1.12 | 5.68 | 3.05 | 2.45 | -- | 0.018 | -- | 0.13 | 16.7 | -- | -- | -- | -- |
| 570.35 | 1.12 | 5.68 | 3.05 | 2.45 | -- | -- | -- | 0.131 | 16.7 | -- | -- | -- | -- |
| 736.43 | 1.26 | 5.72 | 1.77 | -- | 3.03 | -- | -- | -0.147 | -- | 189.1 | 4315 | 17.1 | 13.6 |
| 534.51 | 1.08 | 5.31 | -- | 2.15 | 3.96 | -- | -- | 0.536 | 16.8 | 38.93 | 11513 | 16.9 | 13.7 |
| 889.45 | 1.39 | 5.66 | 2.96 | -- | -- | -- | -- | 0.0664 | -- | -- | -- | -- | -- |
| 815.6 | 1.34 | 5.76 | -- | 2.39 | -- | -- | -- | -0.209 | 16.7 | -- | -- | -- | -- |
| 726.71 | 1.26 | 5.55 | -- | -- | 3.93 | -- | -- | 0.528 | -- | 90.39 | 17263 | 16.6 | 13.7 |
| 1120.1 | 1.56 | 5.73 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 331.70 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 12 |
| 10 | 332.30 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 37 | 332.80 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 136 | 338.04 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 137 | 338.05 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 138 | 338.06 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 143 | 338.21 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 14 |
| 151 | 338.51 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 171 | 339.55 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 172 | 339.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 18 |
| 173 | 339.71 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 177 | 339.79 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 178 | 339.79 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 196 | 340.04 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 198 | 340.09 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 199 | 340.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 211 | 340.54 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 248 | 341.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 16 |
| 251 | 341.09 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 254 | 341.26 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 255 | 341.28 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 265 | 341.44 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 309 | 341.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 335 | 341.80 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 374 | 342.29 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 13 | 20 |
| 375 | 342.30 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 376 | 342.30 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 7 |
| 380 | 342.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 21 |
| 388 | 342.49 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 389 | 342.49 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 392 | 342.52 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 408 | 342.67 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 420 | 342.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 429 | 342.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 12 |
| 454 | 343.11 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 478 | 343.19 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 15 | NA |
| 484 | 343.21 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 487 | 343.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 488 | 343.23 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 496 | 343.28 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 503 | 343.36 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 537 | 343.46 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 548 | 343.50 | temperature | 30.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 597 | 343.73 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 600 | 343.74 | temperature | 30.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 631 | 343.83 | radiation | 40.0 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 671 | 343.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 19 |
| 672 | 343.94 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 727 | 344.03 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 737 | 344.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 22 |
| 738 | 344.11 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 742 | 344.13 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 15 | 8 |
| 780 | 344.28 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 821 | 344.53 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 840 | 344.59 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 863 | 344.74 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 868 | 344.76 | radiation | 40.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 895 | 344.94 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 16 |
| 897 | 344.94 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 900 | 344.96 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 985 | 345.22 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 16 | 2 |