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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0128400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.5 (0.0455) R2 : 0.811
β1 : 0.786 (0.167) R2dD : 0.00911 R2D : 0.00184
β2 : 6.19 (0.161) R2dC : 1.13 R2C : 0.673
β3 : 1.55 (0.138) R2dE : 0.0941 R2E : -0.369
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.45 (0.433) R2dD*E : 0.0157 R2D*E : 0.0272
γ1 : 0.752 (0.0972) R2dN8 : 0.0306 R2N8 : 0.00259
σ : 0.85
deviance : 333.08
__
_____
C
peak time of C : 17.3
E
wheather : radiation
threshold : 16.89
memory length : 47
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.767
open length of G : 16.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
326.18 0.849 5.5 0.784 6.1 1.49 1.92 -1.79 0.722 17.3 16.52 48 0.806 16.5
335.86 0.854 5.51 0.839 6.14 1.51 2.77 -- 0.754 17.3 16.58 47 0.749 16.6
333.08 0.85 5.5 0.786 6.19 1.55 -- -2.45 0.752 17.3 16.89 47 0.767 16.4
359.78 0.883 5.5 0.867 6.11 1.48 -- -- 0.75 17.3 16.38 47 0.8 16.5
666.51 1.2 5.23 -0.0162 -- 5.68 -- -5.18 0.361 -- 144.2 816 5.63 10.6
417.71 0.958 5.49 0.842 4.96 -- 2.75 -- 0.66 17.4 -- -- -- --
436.5 0.978 5.49 0.837 4.98 -- -- -- 0.672 17.4 -- -- -- --
441 0.978 5.36 1.16 -- 5.95 -- -- 0.85 -- 239.5 858 4.07 12.7
378.44 0.906 5.5 -- 6.07 1.42 -- -- 0.645 17.3 15.38 47 0.8 16.5
1730.24 1.94 5.42 0.667 -- -- -- -- 0.549 -- -- -- -- --
454.94 0.998 5.51 -- 4.97 -- -- -- 0.579 17.4 -- -- -- --
436.96 0.974 5.51 -- -- 5.51 -- -- 0.583 -- 458.3 831 2.53 16
1741.98 1.95 5.44 -- -- -- -- -- 0.475 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 330.94 radiation 20.0 30 < th dose dependent rect. 1 15
10 338.94 wind 1.0 10 > th dose independent rect. 20 16
13 339.11 humidity 70.0 10 > th dose dependent rect. 1 15
27 340.87 radiation 1.0 270 < th dose independent rect. 22 18
34 341.59 radiation 1.0 270 < th dose dependent rect. 22 18
42 342.61 radiation 1.0 270 < th dose independent rect. 22 10
55 343.48 radiation 1.0 270 < th dose dependent rect. 22 10
57 343.60 humidity 50.0 10 > th dose dependent rect. 1 16
83 344.93 humidity 90.0 10 < th dose independent rect. 20 17
87 345.58 humidity 50.0 270 > th dose dependent rect. 22 7
89 345.69 temperature 20.0 270 > th dose independent rect. 22 6
92 345.92 temperature 20.0 270 > th dose independent rect. 23 4
100 346.21 radiation 1.0 90 < th dose independent rect. 1 15
101 346.22 atmosphere 1015.0 270 < th dose independent rect. 22 8
102 346.30 temperature 30.0 270 < th dose independent rect. 17 17
110 346.79 temperature 10.0 270 > th dose independent rect. 22 8
111 346.79 temperature 30.0 270 < th dose independent rect. 22 8
112 346.79 humidity 50.0 270 > th dose independent rect. 22 8
115 346.79 atmosphere 995.0 270 > th dose independent rect. 22 8
116 346.79 radiation 20.0 270 < th dose independent rect. 22 8
119 346.79 temperature 10.0 270 > th dose independent rect. 6 16
125 346.89 temperature 10.0 270 > th dose dependent rect. 22 8
130 347.02 wind 9.0 270 < th dose independent rect. 22 8
138 347.30 temperature 20.0 270 > th dose independent rect. 11 16
139 347.30 precipitation 0.1 270 < th dose independent rect. 6 16
141 347.30 precipitation 0.1 270 < th dose dependent rect. 6 16
165 348.21 humidity 70.0 10 > th dose dependent rect. 24 9
166 348.35 wind 1.0 270 > th dose independent rect. 10 8
168 348.36 precipitation 0.1 270 < th dose independent rect. 18 16
169 348.36 precipitation 0.1 270 < th dose dependent rect. 18 16
171 348.48 radiation 20.0 30 < th dose dependent sin 4 NA
176 348.96 wind 9.0 270 < th dose independent rect. 6 16
215 349.70 wind 7.0 270 < th dose independent rect. 18 16
229 350.05 temperature 15.0 270 > th dose independent rect. 10 8
232 350.21 humidity 80.0 10 > th dose independent rect. 1 15
235 350.26 humidity 60.0 270 > th dose independent rect. 17 5
247 350.74 temperature 30.0 270 < th dose independent rect. 17 5
255 350.96 precipitation 0.1 270 < th dose independent rect. 22 8
256 350.96 precipitation 0.1 270 < th dose dependent rect. 22 8
261 351.13 humidity 60.0 270 > th dose independent rect. 17 17
269 351.39 temperature 10.0 270 > th dose dependent rect. 22 19
270 351.41 precipitation 0.1 270 < th dose independent rect. 10 8
271 351.41 precipitation 0.1 270 < th dose dependent rect. 10 8
276 351.50 wind 7.0 270 < th dose independent rect. 17 6
289 351.68 wind 9.0 270 < th dose independent rect. 10 8
294 351.84 radiation 30.0 270 < th dose dependent rect. 16 7
299 351.88 atmosphere 1015.0 270 < th dose independent rect. 10 8
300 351.88 temperature 10.0 270 > th dose independent rect. 18 16
329 352.43 radiation 20.0 30 < th dose dependent rect. 1 8
332 352.50 wind 9.0 270 < th dose dependent rect. 17 5
340 352.67 radiation 20.0 270 < th dose independent rect. 16 7
342 352.69 temperature 15.0 270 > th dose independent rect. 23 18
351 352.85 atmosphere 995.0 270 > th dose independent rect. 18 16
359 353.05 radiation 10.0 270 < th dose dependent rect. 17 5
369 353.23 humidity 90.0 270 < th dose independent rect. 10 8
381 353.37 atmosphere 1015.0 270 < th dose independent rect. 23 18
382 353.40 temperature 10.0 270 > th dose dependent rect. 23 5
384 353.42 precipitation 0.1 10 < th dose independent rect. 20 16
385 353.42 precipitation 0.1 10 < th dose dependent rect. 20 16
404 353.60 atmosphere 995.0 10 > th dose dependent rect. 20 16
405 353.62 wind 9.0 270 < th dose independent rect. 23 18
421 353.73 humidity 50.0 270 > th dose independent rect. 5 17
449 354.15 atmosphere 995.0 270 > th dose independent rect. 10 8
465 354.29 temperature 10.0 270 > th dose independent rect. 17 6
472 354.30 atmosphere 995.0 90 > th dose dependent rect. 19 17
524 354.72 precipitation 0.1 270 < th dose independent rect. 3 9
525 354.72 precipitation 0.1 270 < th dose dependent rect. 3 9
550 354.89 atmosphere 995.0 270 > th dose independent rect. 23 18
564 355.13 precipitation 0.1 270 < th dose independent rect. 17 6
565 355.13 precipitation 0.1 270 < th dose dependent rect. 17 6
622 355.84 wind 1.0 10 > th dose independent rect. 12 8
629 355.86 temperature 10.0 270 > th dose dependent rect. 10 18
633 355.89 atmosphere 1015.0 270 < th dose independent rect. 6 16
635 355.91 humidity 70.0 10 > th dose dependent sin 6 NA
645 356.08 wind 9.0 270 < th dose dependent rect. 16 7
666 356.30 atmosphere 1010.0 10 < th dose independent rect. 12 8
670 356.32 temperature 20.0 270 > th dose independent rect. 1 1
686 356.50 precipitation 0.1 10 < th dose independent rect. 12 8
687 356.50 precipitation 0.1 10 < th dose dependent rect. 12 8
696 356.57 atmosphere 995.0 270 > th dose independent rect. 6 16
718 356.77 radiation 1.0 90 > th dose independent rect. 4 9
749 356.89 temperature 20.0 10 > th dose independent rect. 13 17
751 356.92 temperature 10.0 10 > th dose independent rect. 12 8
754 356.92 temperature 10.0 10 > th dose independent rect. 20 16
755 356.92 atmosphere 995.0 10 > th dose independent rect. 20 16
761 356.96 temperature 20.0 10 > th dose independent rect. 1 5
764 356.96 atmosphere 995.0 270 > th dose dependent rect. 17 5
787 357.11 radiation 40.0 10 < th dose independent rect. 12 8
809 357.28 wind 1.0 270 > th dose independent rect. 17 6
810 357.30 atmosphere 995.0 270 > th dose independent rect. 17 6
811 357.31 temperature 30.0 270 < th dose dependent rect. 5 18
891 357.66 radiation 1.0 90 < th dose independent rect. 1 7
907 357.79 radiation 1.0 90 < th dose independent sin 3 NA
932 357.90 wind 9.0 10 < th dose independent rect. 12 8
933 357.90 wind 9.0 10 < th dose independent rect. 20 16
996 358.35 wind 7.0 270 < th dose independent rect. 19 2