BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0561700 Os08g0561700|AK059841
(211 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0561700 Superoxide dismutase [Cu-Zn], chloroplast prec... 318 2e-87
Os03g0351500 Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1) 193 8e-50
Os07g0665200 Superoxide dismutase [Cu-Zn] 2 (EC 1.15.1.1) 189 2e-48
Os03g0219200 Similar to Superoxide dismutase (EC 1.15.1.1) 186 1e-47
Os03g0739900 72 4e-13
>Os08g0561700 Superoxide dismutase [Cu-Zn], chloroplast precursor (EC 1.15.1.1)
Length = 211
Score = 318 bits (815), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 164/193 (84%), Positives = 164/193 (84%)
Query: 19 TAPPASLFQSPSSARPFHSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTSQVEGVVTL 78
TAPPASLFQSPSSARPFHSL GTSQVEGVVTL
Sbjct: 19 TAPPASLFQSPSSARPFHSLRLAAGPAGAAAARALVVADATKKAVAVLKGTSQVEGVVTL 78
Query: 79 TQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHA 138
TQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHA
Sbjct: 79 TQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHA 138
Query: 139 GDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAG 198
GDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAG
Sbjct: 139 GDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAG 198
Query: 199 GRLACGVVGLTPL 211
GRLACGVVGLTPL
Sbjct: 199 GRLACGVVGLTPL 211
>Os03g0351500 Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1)
Length = 152
Score = 193 bits (490), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 91/137 (66%), Positives = 108/137 (78%)
Query: 72 VEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAP 131
V+G + Q+ GPTTV V+GL PGLHGFH+H GDTTNGC+STGPH+NP HGAP
Sbjct: 14 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAP 73
Query: 132 EDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELS 191
EDE RHAGDLGN+ A +GVA +VD QIPL+GPNS++GRA VVH DDLGKGGHELS
Sbjct: 74 EDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELS 133
Query: 192 LSTGNAGGRLACGVVGL 208
+TGNAGGR+ACG++GL
Sbjct: 134 KTTGNAGGRVACGIIGL 150
>Os07g0665200 Superoxide dismutase [Cu-Zn] 2 (EC 1.15.1.1)
Length = 152
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/137 (64%), Positives = 108/137 (78%)
Query: 72 VEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAP 131
V+G + +Q+ GPT+V V+GL PGLHGFH+H GDTTNGC+STGPHFNP HGAP
Sbjct: 14 VKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAP 73
Query: 132 EDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELS 191
+DE RHAGDLGNI A A+GVA + D QIPL+G +S++GRA VVH DDLGKGGHELS
Sbjct: 74 QDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELS 133
Query: 192 LSTGNAGGRLACGVVGL 208
+TGNAGGR+ACG++GL
Sbjct: 134 KTTGNAGGRVACGIIGL 150
>Os03g0219200 Similar to Superoxide dismutase (EC 1.15.1.1)
Length = 162
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
Query: 68 GTSQVEGVVTLTQD-DQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNL 126
G S V G + QD G T V RVTGL PGLHGFH+H FGDTTNGC STGPHFNP+N
Sbjct: 17 GNSAVAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNK 76
Query: 127 THGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKG 186
+HGAP D+ RH GDLGNIVAN +GVA+ I D QI LSGP+S++GRA VVH DDLG+G
Sbjct: 77 SHGAPSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 136
Query: 187 GHELSLSTGNAGGRLACGVVGL 208
GHELS +TGNAG R+ CG++GL
Sbjct: 137 GHELSKTTGNAGARIGCGIIGL 158
>Os03g0739900
Length = 166
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 33/35 (94%)
Query: 117 TGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGV 151
GPHFNPNNLTHGAPEDEVRHAGDLGNIVANAE V
Sbjct: 7 AGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEDV 41
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,863,269
Number of extensions: 277670
Number of successful extensions: 396
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 5
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)