Os03g0219200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Superoxide dismutase (EC 1.15.1.1).
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Os03g0219200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Superoxide dismutase (EC 1.15.1.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.16 | 0.24 | 11.9 | -1.98 | 0.706 | -1.85 | 0.103 | -0.536 | -0.408 | 5.74 | 31.34 | 273 | -- | -- |
| 26.35 | 0.239 | 11.9 | -2.06 | 0.697 | -1.85 | 0.0698 | -- | -0.424 | 5.79 | 31.76 | 282 | -- | -- |
| 26.15 | 0.238 | 11.9 | -1.99 | 0.713 | -1.87 | -- | -0.485 | -0.406 | 5.81 | 31.49 | 285 | -- | -- |
| 26.32 | 0.239 | 11.9 | -2.06 | 0.706 | -1.87 | -- | -- | -0.42 | 5.79 | 31.78 | 283 | -- | -- |
| 41.78 | 0.303 | 11.9 | -1.84 | -- | -1.25 | -- | -0.32 | -0.293 | -- | 31.49 | 285 | -- | -- |
| 68.42 | 0.388 | 11.8 | -1.63 | 0.23 | -- | 0.00893 | -- | -0.104 | 8.8 | -- | -- | -- | -- |
| 68.43 | 0.387 | 11.8 | -1.63 | 0.23 | -- | -- | -- | -0.104 | 8.79 | -- | -- | -- | -- |
| 32.98 | 0.267 | 11.9 | -2.11 | -- | -1.49 | -- | -- | -0.381 | -- | 63.4 | 1505 | -- | -- |
| 125.7 | 0.525 | 11.8 | -- | 0.329 | -1.08 | -- | -- | -0.0523 | 5.08 | 81.95 | 157 | -- | -- |
| 71.43 | 0.395 | 11.8 | -1.63 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 138.2 | 0.55 | 11.8 | -- | 0.228 | -- | -- | -- | 0.0769 | 9.32 | -- | -- | -- | -- |
| 130.35 | 0.533 | 11.8 | -- | -- | -0.852 | -- | -- | -0.0175 | -- | 175 | 2 | -- | -- |
| 141.24 | 0.555 | 11.8 | -- | -- | -- | -- | -- | 0.078 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 2 | 26.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 4 | 26.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 7 | 26.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 8 | 26.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 14 | 26.55 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 20 | 26.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 22 | 26.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 28 | 26.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 29 | 26.87 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 45 | 27.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 48 | 27.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 68 | 27.35 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 72 | 27.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 115 | 27.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 117 | 27.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 123 | 27.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 133 | 27.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 163 | 27.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 170 | 27.88 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 175 | 27.91 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 190 | 27.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 197 | 27.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 208 | 28.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 210 | 28.02 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 259 | 28.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 401 | 28.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 545 | 28.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 4 |
| 569 | 29.07 | temperature | 15 | 1440 | > th | dose dependent | sin | 14 | NA |
| 595 | 29.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 603 | 29.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 768 | 29.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 858 | 29.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 10 |