BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0219200 Os03g0219200|AK073785
(162 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18100.1 | chr5:5987221-5988706 FORWARD LENGTH=165 198 1e-51
AT1G08830.1 | chr1:2827700-2829053 FORWARD LENGTH=153 183 4e-47
AT2G28190.1 | chr2:12014548-12016303 FORWARD LENGTH=217 179 8e-46
AT1G12520.1 | chr1:4267277-4268900 REVERSE LENGTH=321 60 4e-10
>AT5G18100.1 | chr5:5987221-5988706 FORWARD LENGTH=165
Length = 164
Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/158 (65%), Positives = 123/158 (77%), Gaps = 4/158 (2%)
Query: 4 GGLKGVALIXXXXXXXXXXXXLHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNG 63
G L+ VALI L F QD S G T V G+++GL+PG HGFHIHSFGDTTNG
Sbjct: 6 GNLRAVALIAGDNNVRGC---LQFVQDIS-GTTHVTGKISGLSPGFHGFHIHSFGDTTNG 61
Query: 64 CNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRA 123
C STGPHFNP N+ HG P+++ERH GDLGNI+A +GVA+I IKD I LSG +SILGRA
Sbjct: 62 CISTGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRA 121
Query: 124 VVVHADSDDLGRGGHELSKTTGNAGARIGCGIIGLRSA 161
VVVHAD DDLG+GGH+LSK+TGNAG+R+GCGIIGL+S+
Sbjct: 122 VVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQSS 159
>AT1G08830.1 | chr1:2827700-2829053 FORWARD LENGTH=153
Length = 152
Score = 183 bits (464), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 99/133 (74%)
Query: 27 FFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDER 86
FF G T V G V+GL PGLHGFH+H+ GDTTNGC STGPHFNP K+HGAP D R
Sbjct: 19 FFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANR 78
Query: 87 HVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGGHELSKTTGN 146
H GDLGNI DG A I D QI L+GP+SI+GRAVVVHAD DDLG+GGHELS TGN
Sbjct: 79 HAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGN 138
Query: 147 AGARIGCGIIGLR 159
AG R+ CGIIGL+
Sbjct: 139 AGGRVACGIIGLQ 151
>AT2G28190.1 | chr2:12014548-12016303 FORWARD LENGTH=217
Length = 216
Score = 179 bits (453), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 102/130 (78%), Gaps = 1/130 (0%)
Query: 29 QDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHV 88
QD S G T V R+TGL PG HGFH+H FGDTTNGC STGPHFNP+N +HGAP D+ RH
Sbjct: 85 QDDS-GPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHA 143
Query: 89 GDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGGHELSKTTGNAG 148
GDLGNI AN DGVA+ I D QI L+GP+S++GRA VVH DDLG+GGHELS TTGNAG
Sbjct: 144 GDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAG 203
Query: 149 ARIGCGIIGL 158
R+ CG+IGL
Sbjct: 204 GRLACGVIGL 213
>AT1G12520.1 | chr1:4267277-4268900 REVERSE LENGTH=321
Length = 320
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 28 FQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERH 87
F S + TGL+PG H + I+ +GD TNG STG +NP G
Sbjct: 179 FAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT-----EP 233
Query: 88 VGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDD 132
+GDLG + A+K+G A K ++ ++ ++GRAVVV+ D+
Sbjct: 234 LGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDN 275
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,707,619
Number of extensions: 157732
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 4
Length of query: 162
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 71
Effective length of database: 8,611,713
Effective search space: 611431623
Effective search space used: 611431623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)