BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0219200 Os03g0219200|AK073785
(162 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0219200 Similar to Superoxide dismutase (EC 1.15.1.1) 294 2e-80
Os07g0665200 Superoxide dismutase [Cu-Zn] 2 (EC 1.15.1.1) 192 9e-50
Os03g0351500 Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1) 191 1e-49
Os08g0561700 Superoxide dismutase [Cu-Zn], chloroplast prec... 181 2e-46
>Os03g0219200 Similar to Superoxide dismutase (EC 1.15.1.1)
Length = 162
Score = 294 bits (752), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/162 (92%), Positives = 150/162 (92%)
Query: 1 GKAGGLKGVALIXXXXXXXXXXXXLHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDT 60
GKAGGLKGVALI LHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDT
Sbjct: 1 GKAGGLKGVALIGGAGGNSAVAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDT 60
Query: 61 TNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSIL 120
TNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSIL
Sbjct: 61 TNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSIL 120
Query: 121 GRAVVVHADSDDLGRGGHELSKTTGNAGARIGCGIIGLRSAV 162
GRAVVVHADSDDLGRGGHELSKTTGNAGARIGCGIIGLRSAV
Sbjct: 121 GRAVVVHADSDDLGRGGHELSKTTGNAGARIGCGIIGLRSAV 162
>Os07g0665200 Superoxide dismutase [Cu-Zn] 2 (EC 1.15.1.1)
Length = 152
Score = 192 bits (488), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 104/133 (78%)
Query: 27 FFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDER 86
FF G T V G V+GL PGLHGFH+H+ GDTTNGC STGPHFNP K HGAP D+ R
Sbjct: 19 FFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENR 78
Query: 87 HVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGGHELSKTTGN 146
H GDLGNI A DGVA++ + D QI L+G HSI+GRAVVVHAD DDLG+GGHELSKTTGN
Sbjct: 79 HAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGN 138
Query: 147 AGARIGCGIIGLR 159
AG R+ CGIIGL+
Sbjct: 139 AGGRVACGIIGLQ 151
>Os03g0351500 Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1)
Length = 152
Score = 191 bits (486), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/135 (68%), Positives = 109/135 (80%), Gaps = 1/135 (0%)
Query: 25 LHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDD 84
+HF Q+ G T V G V+GL PGLHGFHIH+ GDTTNGC STGPH+NP K HGAP D+
Sbjct: 18 IHFVQE-GDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDE 76
Query: 85 ERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGGHELSKTT 144
RH GDLGN+ A +DGVA+I + D QI L+GP+SI+GRAVVVHAD DDLG+GGHELSKTT
Sbjct: 77 TRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTT 136
Query: 145 GNAGARIGCGIIGLR 159
GNAG R+ CGIIGL+
Sbjct: 137 GNAGGRVACGIIGLQ 151
>Os08g0561700 Superoxide dismutase [Cu-Zn], chloroplast precursor (EC 1.15.1.1)
Length = 211
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/125 (69%), Positives = 101/125 (80%)
Query: 34 GYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGN 93
G T V RVTGL PGLHGFH+H FGDTTNGC STGPHFNP+N +HGAP D+ RH GDLGN
Sbjct: 84 GPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGN 143
Query: 94 IVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGGHELSKTTGNAGARIGC 153
IVAN +GVA+ I D QI LSGP+S++GRA VVH DDLG+GGHELS +TGNAG R+ C
Sbjct: 144 IVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLAC 203
Query: 154 GIIGL 158
G++GL
Sbjct: 204 GVVGL 208
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,150,809
Number of extensions: 266036
Number of successful extensions: 560
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 4
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)