Os08g0561700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Superoxide dismutase [Cu-Zn], chloroplast precursor (EC 1.15.1.1).
FiT-DB / Search/ Help/ Sample detail
|
Os08g0561700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Superoxide dismutase [Cu-Zn], chloroplast precursor (EC 1.15.1.1).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.67 | 0.481 | 12.9 | -1.87 | 1.06 | 0.901 | -0.0237 | 0.28 | -0.501 | 18.1 | 71.2 | 1376 | -- | -- |
| 104.72 | 0.477 | 12.9 | -1.89 | 1.07 | 0.931 | -0.0246 | -- | -0.507 | 18.1 | 71.56 | 1343 | -- | -- |
| 104.66 | 0.476 | 12.9 | -1.87 | 1.07 | 0.907 | -- | 0.259 | -0.506 | 18.1 | 71.59 | 1356 | -- | -- |
| 104.72 | 0.477 | 12.9 | -1.89 | 1.07 | 0.935 | -- | -- | -0.509 | 18.1 | 71.54 | 1330 | -- | -- |
| 124.27 | 0.519 | 12.9 | -1.87 | -- | 1.4 | -- | -0.765 | -0.641 | -- | 86.27 | 557 | -- | -- |
| 125.11 | 0.524 | 12.9 | -1.72 | 1.03 | -- | -0.0687 | -- | -0.614 | 18.4 | -- | -- | -- | -- |
| 125.12 | 0.524 | 12.9 | -1.71 | 1.03 | -- | -- | -- | -0.615 | 18.4 | -- | -- | -- | -- |
| 125.19 | 0.521 | 12.9 | -1.83 | -- | 1.35 | -- | -- | -0.606 | -- | 86 | 574 | -- | -- |
| 136.27 | 0.544 | 12.9 | -- | 1.04 | 1.61 | -- | -- | -0.244 | 18.4 | 65.98 | 47520 | -- | -- |
| 180.08 | 0.627 | 12.9 | -1.74 | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
| 202.6 | 0.666 | 12.9 | -- | 1.05 | -- | -- | -- | -0.424 | 18.3 | -- | -- | -- | -- |
| 192.43 | 0.646 | 12.8 | -- | -- | 1.62 | -- | -- | -0.259 | -- | 65.61 | 47520 | -- | -- |
| 260.03 | 0.753 | 12.9 | -- | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.96 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 9 | 102.52 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 11 | 102.60 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 16 | 102.81 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 18 | 102.85 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 17 |
| 22 | 102.98 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 19 |
| 26 | 103.06 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 28 | 103.08 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 30 | 103.09 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 33 | 103.14 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 36 | 103.21 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 43 | 103.28 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 49 | 103.33 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 51 | 103.33 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 62 | 103.47 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 17 |
| 76 | 103.58 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 80 | 103.63 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 85 | 103.66 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 87 | 103.67 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 3 | NA |
| 90 | 103.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 91 | 103.70 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 135 | 103.97 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 149 | 104.05 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 162 | 104.14 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 196 | 104.33 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 203 | 104.34 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 205 | 104.35 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 206 | 104.35 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 207 | 104.35 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 247 | 104.47 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 255 | 104.50 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 288 | 104.52 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 295 | 104.53 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 322 | 104.64 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 392 | 104.75 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 393 | 104.75 | wind | 9.0 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 420 | 104.80 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 442 | 104.82 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 455 | 104.82 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 473 | 104.88 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 476 | 104.88 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 493 | 104.90 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 496 | 104.90 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 504 | 104.91 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 515 | 104.93 | humidity | 70.0 | 1440 | < th | dose dependent | no | NA | NA |
| 647 | 105.01 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 666 | 105.03 | wind | 9.0 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 703 | 105.10 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 706 | 105.11 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 728 | 105.13 | radiation | 40.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 744 | 105.17 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 772 | 105.24 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 793 | 105.25 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 827 | 105.30 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 850 | 105.32 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 858 | 105.32 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 15 | 22 |
| 867 | 105.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 904 | 105.37 | wind | 9.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 945 | 105.42 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 949 | 105.42 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 954 | 105.43 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 962 | 105.43 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 22 | 16 |
| 968 | 105.44 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 970 | 105.44 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 974 | 105.44 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 9 | 22 |