BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0561700 Os08g0561700|AK059841
         (211 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28190.1  | chr2:12014548-12016303 FORWARD LENGTH=217          269   1e-72
AT1G08830.1  | chr1:2827700-2829053 FORWARD LENGTH=153            191   2e-49
AT5G18100.1  | chr5:5987221-5988706 FORWARD LENGTH=165            183   5e-47
AT1G12520.1  | chr1:4267277-4268900 REVERSE LENGTH=321             57   5e-09

>AT2G28190.1 | chr2:12014548-12016303 FORWARD LENGTH=217
          Length = 216

 Score =  269 bits (687), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/144 (90%), Positives = 137/144 (95%)

Query: 68  GTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLT 127
           GTS VEGVVTLTQDD GPTTVNVR+TGLTPG HGFHLHEFGDTTNGCISTGPHFNPNN+T
Sbjct: 73  GTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMT 132

Query: 128 HGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGG 187
           HGAPEDE RHAGDLGNI ANA+GVAE TIVD QIPL+GPNSVVGRAFVVHEL+DDLGKGG
Sbjct: 133 HGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGG 192

Query: 188 HELSLSTGNAGGRLACGVVGLTPL 211
           HELSL+TGNAGGRLACGV+GLTPL
Sbjct: 193 HELSLTTGNAGGRLACGVIGLTPL 216



>AT1G08830.1 | chr1:2827700-2829053 FORWARD LENGTH=153
          Length = 152

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/137 (68%), Positives = 108/137 (78%)

Query: 72  VEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAP 131
           V G +  TQ+  G TTV+  V+GL PGLHGFH+H  GDTTNGC+STGPHFNP+  THGAP
Sbjct: 14  VTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAP 73

Query: 132 EDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELS 191
           ED  RHAGDLGNI    +G A  TI D QIPL+GPNS+VGRA VVH   DDLGKGGHELS
Sbjct: 74  EDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELS 133

Query: 192 LSTGNAGGRLACGVVGL 208
           L+TGNAGGR+ACG++GL
Sbjct: 134 LATGNAGGRVACGIIGL 150



>AT5G18100.1 | chr5:5987221-5988706 FORWARD LENGTH=165
          Length = 164

 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 105/141 (74%)

Query: 68  GTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLT 127
           G + V G +   QD  G T V  +++GL+PG HGFH+H FGDTTNGCISTGPHFNP N  
Sbjct: 16  GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRV 75

Query: 128 HGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGG 187
           HG P +E RHAGDLGNI+A + GVAE  I DK IPLSG  S++GRA VVH   DDLGKGG
Sbjct: 76  HGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGG 135

Query: 188 HELSLSTGNAGGRLACGVVGL 208
           H+LS STGNAG R+ CG++GL
Sbjct: 136 HKLSKSTGNAGSRVGCGIIGL 156



>AT1G12520.1 | chr1:4267277-4268900 REVERSE LENGTH=321
          Length = 320

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 72  VEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAP 131
           + GVV   Q       +    TGL+PG H + ++E+GD TNG  STG  +NP     G  
Sbjct: 173 IFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTG-- 230

Query: 132 EDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDD 182
                  GDLG + A+  G  EA    K+  L   + ++GRA VV++ +D+
Sbjct: 231 ---TEPLGDLGTLEADKNG--EAFYSGKKEKLKVAD-LIGRAVVVYKTDDN 275



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,105,720
Number of extensions: 164004
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 4
Length of query: 211
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 117
Effective length of database: 8,529,465
Effective search space: 997947405
Effective search space used: 997947405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)