Os03g0351500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1).
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Os03g0351500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Superoxide dismutase [Cu-Zn] 1 (EC 1.15.1.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.13 | 0.316 | 14.2 | -0.491 | 1.32 | -0.534 | 0.706 | -1.7 | 0.246 | 9.7 | 24.9 | 828 | -- | -- |
| 46.09 | 0.316 | 14.1 | -0.224 | 1.36 | -0.607 | 0.985 | -- | 0.283 | 9.61 | 26.51 | 879 | -- | -- |
| 46.74 | 0.318 | 14.2 | -0.581 | 1.3 | -0.511 | -- | -2.36 | 0.244 | 9.71 | 24.5 | 804 | -- | -- |
| 48.7 | 0.325 | 14.1 | -0.139 | 1.28 | -0.758 | -- | -- | 0.3 | 9.8 | 25.7 | 799 | -- | -- |
| 123.48 | 0.518 | 14.1 | 0.137 | -- | -1.65 | -- | 0.533 | 0.472 | -- | 24.5 | 758 | -- | -- |
| 56.63 | 0.353 | 14.1 | -0.354 | 1.52 | -- | 1.08 | -- | 0.266 | 9.59 | -- | -- | -- | -- |
| 61.01 | 0.366 | 14.1 | -0.313 | 1.51 | -- | -- | -- | 0.268 | 9.58 | -- | -- | -- | -- |
| 123.39 | 0.517 | 14.1 | 0.0265 | -- | -1.6 | -- | -- | 0.43 | -- | 24.42 | 760 | -- | -- |
| 49.23 | 0.327 | 14.1 | -- | 1.27 | -0.781 | -- | -- | 0.322 | 9.86 | 25.73 | 795 | -- | -- |
| 196.19 | 0.654 | 14.2 | -0.325 | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
| 63.6 | 0.373 | 14.1 | -- | 1.51 | -- | -- | -- | 0.303 | 9.6 | -- | -- | -- | -- |
| 123.4 | 0.517 | 14.1 | -- | -- | -1.6 | -- | -- | 0.418 | -- | 24.5 | 758 | -- | -- |
| 198.98 | 0.658 | 14.2 | -- | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 9 |
| 2 | 44.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 26 | 44.72 | temperature | 25 | 720 | > th | dose dependent | sin | 17 | NA |
| 101 | 45.25 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 102 | 45.26 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 103 | 45.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 131 | 45.42 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 19 |
| 143 | 45.47 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 12 |
| 153 | 45.51 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 19 |
| 155 | 45.52 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 169 | 45.56 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 171 | 45.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 185 | 45.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 250 | 45.77 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 5 |
| 300 | 45.93 | temperature | 30 | 720 | > th | dose dependent | sin | 10 | NA |
| 314 | 45.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 376 | 46.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 386 | 46.25 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 17 |
| 389 | 46.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 7 |
| 391 | 46.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 11 |
| 393 | 46.26 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 4 |
| 407 | 46.26 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 20 |
| 465 | 46.41 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 10 |
| 479 | 46.45 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 21 |
| 481 | 46.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 486 | 46.47 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 494 | 46.49 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 7 |
| 520 | 46.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 526 | 46.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 527 | 46.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 14 |
| 530 | 46.54 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 542 | 46.56 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 545 | 46.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 577 | 46.59 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 586 | 46.60 | temperature | 30 | 4320 | > th | dose independent | sin | 14 | NA |
| 588 | 46.60 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 1 |
| 589 | 46.60 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 591 | 46.61 | temperature | 30 | 4320 | < th | dose independent | sin | 14 | NA |
| 615 | 46.62 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 23 |
| 639 | 46.63 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 644 | 46.63 | temperature | 30 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 734 | 46.66 | temperature | 30 | 4320 | < th | dose independent | rect. | 12 | 7 |
| 748 | 46.66 | temperature | 30 | 4320 | > th | dose dependent | sin | 15 | NA |