BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0351500 Os03g0351500|AK120692
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08830.1  | chr1:2827700-2829053 FORWARD LENGTH=153            246   4e-66
AT2G28190.1  | chr2:12014548-12016303 FORWARD LENGTH=217          204   2e-53
AT5G18100.1  | chr5:5987221-5988706 FORWARD LENGTH=165            203   3e-53
AT1G12520.1  | chr1:4267277-4268900 REVERSE LENGTH=321             59   1e-09

>AT1G08830.1 | chr1:2827700-2829053 FORWARD LENGTH=153
          Length = 152

 Score =  246 bits (627), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/152 (80%), Positives = 130/152 (85%)

Query: 1   MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTG 60
           M K V VL SSE V GTI F QEGDG TTV+G+VSGLKPGLHGFH+HALGDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHA 120
           PH+NP GK HGAPED  RHAGDLGN+T G+DG A   + D QIPLTGPNSI+GRAVVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELS  TGNAGGRVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152



>AT2G28190.1 | chr2:12014548-12016303 FORWARD LENGTH=217
          Length = 216

 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 114/148 (77%)

Query: 3   KAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPH 62
           KAV VL  +  V+G +   Q+  GPTTV   ++GL PG HGFH+H  GDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  YNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADP 122
           +NP    HGAPEDE RHAGDLGN+ A  DGVA   +VD+QIPLTGPNS++GRA VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGKGGHELSKTTGNAGGRVACGIIGL 150
           DDLGKGGHELS TTGNAGGR+ACG+IGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213



>AT5G18100.1 | chr5:5987221-5988706 FORWARD LENGTH=165
          Length = 164

 Score =  203 bits (516), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/150 (64%), Positives = 117/150 (78%)

Query: 2   VKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGP 61
           ++AV ++     V+G + FVQ+  G T VTG +SGL PG HGFHIH+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHAD 121
           H+NP  + HG P +E RHAGDLGN+ AG +GVA I + D  IPL+G  SI+GRAVVVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151
           PDDLGKGGH+LSK+TGNAG RV CGIIGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157



>AT1G12520.1 | chr1:4267277-4268900 REVERSE LENGTH=321
          Length = 320

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 14  VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAP 73
           + G + F Q       +  + +GL PG H + I+  GD TNG  STG  YNP   + G  
Sbjct: 173 IFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTG-- 230

Query: 74  EDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDD 124
              T   GDLG + A ++G A       ++ +     +IGRAVVV+   D+
Sbjct: 231 ---TEPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDN 275



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,916,897
Number of extensions: 179595
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 4
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 107 (45.8 bits)