BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0544900 Os08g0544900|AK102923
         (467 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0544900  Similar to HMG-CoA synthase                         979   0.0  
Os09g0521400  Similar to HMG-CoA synthase                         853   0.0  
Os03g0118800  Similar to HMG-CoA synthase                         787   0.0  

>Os08g0544900 Similar to HMG-CoA synthase
          Length = 467

 Score =  979 bits (2530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/467 (100%), Positives = 467/467 (100%)

Query: 1   MEQPNDVGILAMDIYFPPACVHQEALEAHDGASKGKYTIGLGQDCMAYCSEVEDVISMSL 60
           MEQPNDVGILAMDIYFPPACVHQEALEAHDGASKGKYTIGLGQDCMAYCSEVEDVISMSL
Sbjct: 1   MEQPNDVGILAMDIYFPPACVHQEALEAHDGASKGKYTIGLGQDCMAYCSEVEDVISMSL 60

Query: 61  TVVASLLKKYNIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEESGNTDIEGVDSSNACY 120
           TVVASLLKKYNIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEESGNTDIEGVDSSNACY
Sbjct: 61  TVVASLLKKYNIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEESGNTDIEGVDSSNACY 120

Query: 121 GGTAALLNCVNWVESKSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPISFE 180
           GGTAALLNCVNWVESKSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPISFE
Sbjct: 121 GGTAALLNCVNWVESKSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPISFE 180

Query: 181 SKYRASHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQYCTKYEKIVGEQFSI 240
           SKYRASHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQYCTKYEKIVGEQFSI
Sbjct: 181 SKYRASHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQYCTKYEKIVGEQFSI 240

Query: 241 SDAEYCVFHSPYNKLVQKSFARLYFNDFMRNCSTVDNDAKEKLQPFANLTSEESYQSRDL 300
           SDAEYCVFHSPYNKLVQKSFARLYFNDFMRNCSTVDNDAKEKLQPFANLTSEESYQSRDL
Sbjct: 241 SDAEYCVFHSPYNKLVQKSFARLYFNDFMRNCSTVDNDAKEKLQPFANLTSEESYQSRDL 300

Query: 301 EKASQQVAKHLYDIKVQPSTLLPKQIGNMYTASLYAALASVIYNKHDSLDGQRILMFSYG 360
           EKASQQVAKHLYDIKVQPSTLLPKQIGNMYTASLYAALASVIYNKHDSLDGQRILMFSYG
Sbjct: 301 EKASQQVAKHLYDIKVQPSTLLPKQIGNMYTASLYAALASVIYNKHDSLDGQRILMFSYG 360

Query: 361 SGLTSTMFSLRLHDGQHPFSLMNIASVLDVTTKLESRHVTSPEKFIETLKLMEHRYGAKD 420
           SGLTSTMFSLRLHDGQHPFSLMNIASVLDVTTKLESRHVTSPEKFIETLKLMEHRYGAKD
Sbjct: 361 SGLTSTMFSLRLHDGQHPFSLMNIASVLDVTTKLESRHVTSPEKFIETLKLMEHRYGAKD 420

Query: 421 FETSKDTSLLPPGTFYLTKVDSMYRRFYDKKAAEGKIKGCNGIANGH 467
           FETSKDTSLLPPGTFYLTKVDSMYRRFYDKKAAEGKIKGCNGIANGH
Sbjct: 421 FETSKDTSLLPPGTFYLTKVDSMYRRFYDKKAAEGKIKGCNGIANGH 467



>Os09g0521400 Similar to HMG-CoA synthase
          Length = 476

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/476 (86%), Positives = 436/476 (91%), Gaps = 9/476 (1%)

Query: 1   MEQPNDVGILAMDIYFPPACVHQEALEAHDGASKGKYTIGLGQDCMAYCSEVEDVISMSL 60
           M+   DVGILAMDIYFPP CV QE+LEAHDGASKGKYTIGLGQDCMA+CSEVEDVISMS+
Sbjct: 1   MDGRKDVGILAMDIYFPPTCVLQESLEAHDGASKGKYTIGLGQDCMAFCSEVEDVISMSM 60

Query: 61  TVVASLLKKYNIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEESGNTDIEGVDSSNACY 120
           TVV SLLKKY +DPK IGRLEVGSETVIDKSKSIKTWLM IFEE GNTDIEGVDSSNACY
Sbjct: 61  TVVTSLLKKYKVDPKLIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNACY 120

Query: 121 GGTAALLNCVNWVESKSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPISFE 180
           GGTAALLNCVNWVES SWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPI+FE
Sbjct: 121 GGTAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPIAFE 180

Query: 181 SKYRASHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQYCTKYEKIVGEQFSI 240
           SKY+ASHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQ+C KYEK+ G+QFSI
Sbjct: 181 SKYKASHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQFCKKYEKLAGKQFSI 240

Query: 241 SDAEYCVFHSPYNKLVQKSFARLYFNDFMRNCSTVDNDAKEKLQPFANLTSEESYQSRDL 300
           SDA+Y VFHSPYNKLVQKSFARLY+NDF R+CS+VDNDAKEKLQPF+NLT EESYQSRDL
Sbjct: 241 SDADYFVFHSPYNKLVQKSFARLYYNDFTRDCSSVDNDAKEKLQPFSNLTGEESYQSRDL 300

Query: 301 EKASQQVAKHLYDIKVQPSTLLPKQIGNMYTASLYAALASVIYNKHDSLDGQRILMFSYG 360
           EKASQQVAK LYDIKVQPSTLLPKQIGNMYTASLYAALASV+YNKH SLD QRI+MFSYG
Sbjct: 301 EKASQQVAKPLYDIKVQPSTLLPKQIGNMYTASLYAALASVLYNKHASLDDQRIVMFSYG 360

Query: 361 SGLTSTMFSLRLHDGQHPFSLMNIASVLDVTTKLESRHVTSPEKFIETLKLMEHRYGAKD 420
           SGLTSTMFSL+L++GQ PFSL NIASVL+ T KLESRH+T PEKF+ETLKLMEHRYGAKD
Sbjct: 361 SGLTSTMFSLKLNNGQDPFSLSNIASVLNATEKLESRHMTLPEKFVETLKLMEHRYGAKD 420

Query: 421 FETSKDTSLLPPGTFYLTKVDSMYRRFYDKKAAE----GKIK-----GCNGIANGH 467
           FET KDTSLLPPGTFYLT+VDSMYRRFY++KA E     K K       NG ANGH
Sbjct: 421 FETCKDTSLLPPGTFYLTRVDSMYRRFYERKADEEIAAAKAKYSNGHATNGYANGH 476



>Os03g0118800 Similar to HMG-CoA synthase
          Length = 463

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/462 (80%), Positives = 412/462 (89%), Gaps = 5/462 (1%)

Query: 6   DVGILAMDIYFPPACVHQEALEAHDGASKGKYTIGLGQDCMAYCSEVEDVISMSLTVVAS 65
           DVGILAMDIYFPP CV Q+ LE HDG SKGKYTIGLGQD MA+C+EVEDVISMSLTVV S
Sbjct: 7   DVGILAMDIYFPPTCVLQDELENHDGVSKGKYTIGLGQDSMAFCTEVEDVISMSLTVVKS 66

Query: 66  LLKKYNIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEESGNTDIEGVDSSNACYGGTAA 125
           LL+ Y IDPK IGRLEVGSETVIDKSKSIKTWLM IFEE GNTDIEGVDSSNACYGGTAA
Sbjct: 67  LLENYKIDPKCIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNACYGGTAA 126

Query: 126 LLNCVNWVESKSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPISFESKYRA 185
           L NCVNWVES SWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAP+SFESKYR 
Sbjct: 127 LFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPVSFESKYRG 186

Query: 186 SHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQYCTKYEKIVGEQFSISDAEY 245
           SHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCY  +C KYEK+ G+QFSI DA+Y
Sbjct: 187 SHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYNVFCKKYEKLEGKQFSIHDADY 246

Query: 246 CVFHSPYNKLVQKSFARLYFNDFMRNCSTVDNDAKEKLQPFANLTSEESYQSRDLEKASQ 305
            VFHSPYNKLVQKSFARLY+NDF+R CSTV++ ++EKL+P++ L+SEESYQSR+LEKASQ
Sbjct: 247 FVFHSPYNKLVQKSFARLYYNDFLRKCSTVEDGSREKLEPYSGLSSEESYQSRELEKASQ 306

Query: 306 QVAKHLYDIKVQPSTLLPKQIGNMYTASLYAALASVIYNKHDSLDGQRILMFSYGSGLTS 365
           QVAKHLYD KVQP TL+PKQ+GNMYTASLYAALASV++NK+++L GQRI+MFSYGSGLTS
Sbjct: 307 QVAKHLYDSKVQPITLIPKQVGNMYTASLYAALASVMHNKNETLAGQRIVMFSYGSGLTS 366

Query: 366 TMFSLRLHDGQHPFSLMNIASVLDVTTKLESRHVTSPEKFIETLKLMEHRYGAKDFETSK 425
           TMFS ++++GQHPF L NIA +LDV+ KLESRHV +PEKF+  LKLMEHRYGAKDF TS+
Sbjct: 367 TMFSFKINEGQHPFILSNIAGILDVSKKLESRHVVAPEKFVAALKLMEHRYGAKDFTTSQ 426

Query: 426 DTSLLPPGTFYLTKVDSMYRRFYDKKAAEGKIKGCNGIANGH 467
           DTSLL PGT+YLT VDSMYRRFY  K      +    ++NGH
Sbjct: 427 DTSLLAPGTYYLTHVDSMYRRFYAVKG-----QAVTEVSNGH 463



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,724,790
Number of extensions: 634138
Number of successful extensions: 1376
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1375
Number of HSP's successfully gapped: 3
Length of query: 467
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 363
Effective length of database: 11,605,545
Effective search space: 4212812835
Effective search space used: 4212812835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)