Os09g0521400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HMG-CoA synthase.
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Os09g0521400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HMG-CoA synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.5 | 0.462 | 7.02 | 0.0526 | 1.72 | -1.07 | -0.509 | -1.55 | -0.245 | 10.7 | 1.39 | 4279 | -- | -- |
| 99.4 | 0.464 | 7.04 | -0.224 | 1.72 | -0.926 | -0.544 | -- | -0.251 | 10.7 | 1.66 | 4281 | -- | -- |
| 97.45 | 0.46 | 7.02 | 0.0551 | 1.75 | -1.1 | -- | -1.66 | -0.247 | 10.7 | 1.39 | 4262 | -- | -- |
| 100.81 | 0.468 | 7.04 | -0.28 | 1.69 | -0.923 | -- | -- | -0.27 | 10.7 | 1.66 | 4291 | -- | -- |
| 152.64 | 0.579 | 7.06 | -0.135 | -- | -1.07 | -- | 0.7 | -0.145 | -- | 1.787 | 4588 | -- | -- |
| 119.77 | 0.513 | 7.01 | -0.0804 | 1.62 | -- | -0.639 | -- | -0.091 | 10.6 | -- | -- | -- | -- |
| 121.45 | 0.516 | 7.01 | -0.107 | 1.62 | -- | -- | -- | -0.0932 | 10.6 | -- | -- | -- | -- |
| 155.26 | 0.583 | 7.06 | -0.133 | -- | -1.07 | -- | -- | -0.138 | -- | 1.624 | 17596 | -- | -- |
| 102.61 | 0.472 | 7.04 | -- | 1.69 | -0.89 | -- | -- | -0.269 | 10.7 | 1.66 | 4286 | -- | -- |
| 283.18 | 0.786 | 7.05 | -0.136 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 121.75 | 0.516 | 7 | -- | 1.62 | -- | -- | -- | -0.0813 | 10.6 | -- | -- | -- | -- |
| 155.69 | 0.583 | 7.05 | -- | -- | -1.07 | -- | -- | -0.127 | -- | 1.798 | 17583 | -- | -- |
| 283.67 | 0.786 | 7.04 | -- | -- | -- | -- | -- | -0.0856 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.30 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 3 | 92.37 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 7 | 92.60 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 12 | 92.69 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 13 | 92.80 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 23 | 93.44 | radiation | 30 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 30 | 94.10 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 47 | 95.10 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 58 | 95.15 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 59 | 95.15 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 60 | 95.16 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 62 | 95.19 | radiation | 20 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 65 | 95.27 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 72 | 95.29 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 84 | 95.33 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 96 | 95.45 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 97 | 95.46 | radiation | 1 | 4320 | > th | dose independent | sin | 16 | NA |
| 105 | 95.50 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 136 | 95.66 | radiation | 1 | 4320 | < th | dose independent | sin | 16 | NA |
| 139 | 95.67 | radiation | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 140 | 95.69 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 9 |
| 154 | 95.70 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 185 | 95.76 | radiation | 40 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 214 | 95.79 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 262 | 95.88 | radiation | 1 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 301 | 95.91 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 306 | 95.92 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 358 | 96.09 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 20 |
| 359 | 96.10 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 378 | 96.14 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 13 |
| 405 | 96.19 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 12 |
| 410 | 96.19 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 20 |
| 447 | 96.24 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 475 | 96.32 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 483 | 96.35 | radiation | 30 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 491 | 96.36 | radiation | 30 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 503 | 96.39 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 512 | 96.41 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 547 | 96.49 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 555 | 96.53 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 572 | 96.55 | radiation | 30 | 14400 | > th | dose dependent | sin | 12 | NA |
| 615 | 96.60 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 635 | 96.62 | radiation | 40 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 669 | 96.68 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 17 |
| 676 | 96.70 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 683 | 96.71 | radiation | 20 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 710 | 96.73 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 738 | 96.75 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 744 | 96.76 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 779 | 96.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 10 |
| 787 | 96.80 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 820 | 96.82 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 832 | 96.82 | radiation | 10 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 834 | 96.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 838 | 96.82 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 12 |
| 847 | 96.83 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 848 | 96.83 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 864 | 96.84 | radiation | 40 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 944 | 96.88 | temperature | 10 | 4320 | > th | dose dependent | sin | 0 | NA |
| 947 | 96.88 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 983 | 96.89 | temperature | 10 | 4320 | > th | dose dependent | sin | 22 | NA |