Os03g0118800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HMG-CoA synthase.
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Os03g0118800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HMG-CoA synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114 | 0.502 | 10 | -1.63 | 1.59 | 1.82 | -1.22 | -6.46 | -0.0358 | 11.3 | 24.64 | 1295 | -- | -- |
| 125.09 | 0.521 | 9.88 | -0.427 | 1.54 | 1.52 | -1.04 | -- | 0.0089 | 11.1 | 18.75 | 9181 | -- | -- |
| 120.08 | 0.51 | 9.98 | -1.6 | 1.58 | 1.79 | -- | -6.18 | 0.0187 | 11.3 | 25.09 | 1309 | -- | -- |
| 129.35 | 0.53 | 9.88 | -0.382 | 1.5 | 1.45 | -- | -- | 0.0175 | 11 | 19.62 | 9256 | -- | -- |
| 245.07 | 0.733 | 9.92 | -0.619 | -- | 1.77 | -- | -5.75 | 0.152 | -- | 23.66 | 1537 | -- | -- |
| 179.96 | 0.629 | 9.75 | 0.468 | 1.43 | -- | -1.11 | -- | 0.571 | 11 | -- | -- | -- | -- |
| 185.22 | 0.637 | 9.75 | 0.422 | 1.43 | -- | -- | -- | 0.567 | 11 | -- | -- | -- | -- |
| 250.34 | 0.74 | 9.85 | 0.0476 | -- | 1.71 | -- | -- | 0.284 | -- | 18.51 | 8812 | -- | -- |
| 130.18 | 0.531 | 9.84 | -- | 1.54 | 1.17 | -- | -- | 0.0787 | 11.2 | 21.65 | 8485 | -- | -- |
| 312.64 | 0.826 | 9.79 | 0.39 | -- | -- | -- | -- | 0.556 | -- | -- | -- | -- | -- |
| 189.93 | 0.645 | 9.76 | -- | 1.43 | -- | -- | -- | 0.52 | 11 | -- | -- | -- | -- |
| 250.4 | 0.739 | 9.85 | -- | -- | 1.72 | -- | -- | 0.278 | -- | 18.51 | 8812 | -- | -- |
| 316.66 | 0.831 | 9.8 | -- | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 23 | 107.55 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 27 | 107.62 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 33 | 107.82 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 37 | 107.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 38 | 107.92 | wind | 7 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 42 | 107.98 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 45 | 108.02 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 50 | 108.12 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 102 | 108.86 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |
| 103 | 108.87 | wind | 7 | 43200 | < th | dose independent | sin | 23 | NA |
| 119 | 109.15 | wind | 7 | 43200 | > th | dose independent | sin | 23 | NA |
| 192 | 109.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 212 | 110.02 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 318 | 110.96 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 321 | 110.99 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 370 | 111.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 503 | 112.13 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 504 | 112.13 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 513 | 112.16 | radiation | 20 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 583 | 112.49 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 587 | 112.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 606 | 112.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 627 | 112.75 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 640 | 112.83 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 673 | 112.95 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 708 | 113.09 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 738 | 113.19 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 806 | 113.42 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 811 | 113.43 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 816 | 113.43 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 822 | 113.44 | radiation | 40 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 827 | 113.45 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 831 | 113.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 855 | 113.55 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 951 | 113.86 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 963 | 113.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 1000 | 114.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 7 |