BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0118800 Os03g0118800|AK071039
         (463 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0118800  Similar to HMG-CoA synthase                         968   0.0  
Os09g0521400  Similar to HMG-CoA synthase                         806   0.0  
Os08g0544900  Similar to HMG-CoA synthase                         787   0.0  

>Os03g0118800 Similar to HMG-CoA synthase
          Length = 463

 Score =  968 bits (2502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/463 (100%), Positives = 463/463 (100%)

Query: 1   MAAERKDVGILAMDIYFPPTCVLQDELENHDGVSKGKYTIGLGQDSMAFCTEVEDVISMS 60
           MAAERKDVGILAMDIYFPPTCVLQDELENHDGVSKGKYTIGLGQDSMAFCTEVEDVISMS
Sbjct: 1   MAAERKDVGILAMDIYFPPTCVLQDELENHDGVSKGKYTIGLGQDSMAFCTEVEDVISMS 60

Query: 61  LTVVKSLLENYKIDPKCIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNAC 120
           LTVVKSLLENYKIDPKCIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNAC
Sbjct: 61  LTVVKSLLENYKIDPKCIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNAC 120

Query: 121 YGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPVSF 180
           YGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPVSF
Sbjct: 121 YGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPVSF 180

Query: 181 ESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYNVFCKKYEKLEGKQFS 240
           ESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYNVFCKKYEKLEGKQFS
Sbjct: 181 ESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYNVFCKKYEKLEGKQFS 240

Query: 241 IHDADYFVFHSPYNKLVQKSFARLYYNDFLRKCSTVEDGSREKLEPYSGLSSEESYQSRE 300
           IHDADYFVFHSPYNKLVQKSFARLYYNDFLRKCSTVEDGSREKLEPYSGLSSEESYQSRE
Sbjct: 241 IHDADYFVFHSPYNKLVQKSFARLYYNDFLRKCSTVEDGSREKLEPYSGLSSEESYQSRE 300

Query: 301 LEKASQQVAKHLYDSKVQPITLIPKQVGNMYTASLYAALASVMHNKNETLAGQRIVMFSY 360
           LEKASQQVAKHLYDSKVQPITLIPKQVGNMYTASLYAALASVMHNKNETLAGQRIVMFSY
Sbjct: 301 LEKASQQVAKHLYDSKVQPITLIPKQVGNMYTASLYAALASVMHNKNETLAGQRIVMFSY 360

Query: 361 GSGLTSTMFSFKINEGQHPFILSNIAGILDVSKKLESRHVVAPEKFVAALKLMEHRYGAK 420
           GSGLTSTMFSFKINEGQHPFILSNIAGILDVSKKLESRHVVAPEKFVAALKLMEHRYGAK
Sbjct: 361 GSGLTSTMFSFKINEGQHPFILSNIAGILDVSKKLESRHVVAPEKFVAALKLMEHRYGAK 420

Query: 421 DFTTSQDTSLLAPGTYYLTHVDSMYRRFYAVKGQAVTEVSNGH 463
           DFTTSQDTSLLAPGTYYLTHVDSMYRRFYAVKGQAVTEVSNGH
Sbjct: 421 DFTTSQDTSLLAPGTYYLTHVDSMYRRFYAVKGQAVTEVSNGH 463



>Os09g0521400 Similar to HMG-CoA synthase
          Length = 476

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/464 (82%), Positives = 414/464 (89%), Gaps = 5/464 (1%)

Query: 5   RKDVGILAMDIYFPPTCVLQDELENHDGVSKGKYTIGLGQDSMAFCTEVEDVISMSLTVV 64
           RKDVGILAMDIYFPPTCVLQ+ LE HDG SKGKYTIGLGQD MAFC+EVEDVISMS+TVV
Sbjct: 4   RKDVGILAMDIYFPPTCVLQESLEAHDGASKGKYTIGLGQDCMAFCSEVEDVISMSMTVV 63

Query: 65  KSLLENYKIDPKCIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNACYGGT 124
            SLL+ YK+DPK IGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNACYGGT
Sbjct: 64  TSLLKKYKVDPKLIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNACYGGT 123

Query: 125 AALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPVSFESKY 184
           AAL NCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAP++FESKY
Sbjct: 124 AALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPIAFESKY 183

Query: 185 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYNVFCKKYEKLEGKQFSIHDA 244
           + SHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCY  FCKKYEKL GKQFSI DA
Sbjct: 184 KASHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQFCKKYEKLAGKQFSISDA 243

Query: 245 DYFVFHSPYNKLVQKSFARLYYNDFLRKCSTVEDGSREKLEPYSGLSSEESYQSRELEKA 304
           DYFVFHSPYNKLVQKSFARLYYNDF R CS+V++ ++EKL+P+S L+ EESYQSR+LEKA
Sbjct: 244 DYFVFHSPYNKLVQKSFARLYYNDFTRDCSSVDNDAKEKLQPFSNLTGEESYQSRDLEKA 303

Query: 305 SQQVAKHLYDSKVQPITLIPKQVGNMYTASLYAALASVMHNKNETLAGQRIVMFSYGSGL 364
           SQQVAK LYD KVQP TL+PKQ+GNMYTASLYAALASV++NK+ +L  QRIVMFSYGSGL
Sbjct: 304 SQQVAKPLYDIKVQPSTLLPKQIGNMYTASLYAALASVLYNKHASLDDQRIVMFSYGSGL 363

Query: 365 TSTMFSFKINEGQHPFILSNIAGILDVSKKLESRHVVAPEKFVAALKLMEHRYGAKDFTT 424
           TSTMFS K+N GQ PF LSNIA +L+ ++KLESRH+  PEKFV  LKLMEHRYGAKDF T
Sbjct: 364 TSTMFSLKLNNGQDPFSLSNIASVLNATEKLESRHMTLPEKFVETLKLMEHRYGAKDFET 423

Query: 425 SQDTSLLAPGTYYLTHVDSMYRRFYAVKGQ-----AVTEVSNGH 463
            +DTSLL PGT+YLT VDSMYRRFY  K       A  + SNGH
Sbjct: 424 CKDTSLLPPGTFYLTRVDSMYRRFYERKADEEIAAAKAKYSNGH 467



>Os08g0544900 Similar to HMG-CoA synthase
          Length = 467

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/462 (80%), Positives = 412/462 (89%), Gaps = 5/462 (1%)

Query: 7   DVGILAMDIYFPPTCVLQDELENHDGVSKGKYTIGLGQDSMAFCTEVEDVISMSLTVVKS 66
           DVGILAMDIYFPP CV Q+ LE HDG SKGKYTIGLGQD MA+C+EVEDVISMSLTVV S
Sbjct: 6   DVGILAMDIYFPPACVHQEALEAHDGASKGKYTIGLGQDCMAYCSEVEDVISMSLTVVAS 65

Query: 67  LLENYKIDPKCIGRLEVGSETVIDKSKSIKTWLMQIFEECGNTDIEGVDSSNACYGGTAA 126
           LL+ Y IDPK IGRLEVGSETVIDKSKSIKTWLM IFEE GNTDIEGVDSSNACYGGTAA
Sbjct: 66  LLKKYNIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEESGNTDIEGVDSSNACYGGTAA 125

Query: 127 LFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPVSFESKYRG 186
           L NCVNWVES SWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAP+SFESKYR 
Sbjct: 126 LLNCVNWVESKSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPISFESKYRA 185

Query: 187 SHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYNVFCKKYEKLEGKQFSIHDADY 246
           SHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCY  +C KYEK+ G+QFSI DA+Y
Sbjct: 186 SHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQYCTKYEKIVGEQFSISDAEY 245

Query: 247 FVFHSPYNKLVQKSFARLYYNDFLRKCSTVEDGSREKLEPYSGLSSEESYQSRELEKASQ 306
            VFHSPYNKLVQKSFARLY+NDF+R CSTV++ ++EKL+P++ L+SEESYQSR+LEKASQ
Sbjct: 246 CVFHSPYNKLVQKSFARLYFNDFMRNCSTVDNDAKEKLQPFANLTSEESYQSRDLEKASQ 305

Query: 307 QVAKHLYDSKVQPITLIPKQVGNMYTASLYAALASVMHNKNETLAGQRIVMFSYGSGLTS 366
           QVAKHLYD KVQP TL+PKQ+GNMYTASLYAALASV++NK+++L GQRI+MFSYGSGLTS
Sbjct: 306 QVAKHLYDIKVQPSTLLPKQIGNMYTASLYAALASVIYNKHDSLDGQRILMFSYGSGLTS 365

Query: 367 TMFSFKINEGQHPFILSNIAGILDVSKKLESRHVVAPEKFVAALKLMEHRYGAKDFTTSQ 426
           TMFS ++++GQHPF L NIA +LDV+ KLESRHV +PEKF+  LKLMEHRYGAKDF TS+
Sbjct: 366 TMFSLRLHDGQHPFSLMNIASVLDVTTKLESRHVTSPEKFIETLKLMEHRYGAKDFETSK 425

Query: 427 DTSLLAPGTYYLTHVDSMYRRFYAVKG-----QAVTEVSNGH 463
           DTSLL PGT+YLT VDSMYRRFY  K      +    ++NGH
Sbjct: 426 DTSLLPPGTFYLTKVDSMYRRFYDKKAAEGKIKGCNGIANGH 467



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,297,923
Number of extensions: 619429
Number of successful extensions: 1337
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1337
Number of HSP's successfully gapped: 3
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)