Os08g0544900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HMG-CoA synthase.
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Os08g0544900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HMG-CoA synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.42 | 0.25 | 12.1 | -0.852 | 0.954 | 0.535 | 0.224 | -1.58 | 0.0744 | 6.48 | 20.56 | 1307 | -- | -- |
| 30.26 | 0.256 | 12.1 | -0.494 | 0.952 | 0.581 | 0.239 | -- | 0.161 | 6.43 | 15 | 2860 | -- | -- |
| 28.48 | 0.249 | 12.1 | -0.883 | 0.958 | 0.55 | -- | -1.74 | 0.0663 | 6.53 | 21.64 | 1250 | -- | -- |
| 30.28 | 0.256 | 12.1 | -0.455 | 0.952 | 0.554 | -- | -- | 0.191 | 6.43 | 14.38 | 2827 | -- | -- |
| 75.68 | 0.405 | 12.1 | -0.85 | -- | 0.61 | -- | -1.59 | 0.0764 | -- | 21.74 | 1317 | -- | -- |
| 36.37 | 0.283 | 12 | -0.232 | 0.973 | -- | 0.214 | -- | 0.305 | 6.28 | -- | -- | -- | -- |
| 36.48 | 0.283 | 12 | -0.23 | 0.974 | -- | -- | -- | 0.304 | 6.27 | -- | -- | -- | -- |
| 77.17 | 0.409 | 12.1 | -0.467 | -- | 0.642 | -- | -- | 0.193 | -- | 14.08 | 2799 | -- | -- |
| 34.56 | 0.274 | 12 | -- | 0.998 | 0.404 | -- | -- | 0.268 | 6.39 | 14.34 | 2022 | -- | -- |
| 85.7 | 0.433 | 12.1 | -0.204 | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
| 37.88 | 0.288 | 12 | -- | 0.971 | -- | -- | -- | 0.33 | 6.29 | -- | -- | -- | -- |
| 81.9 | 0.422 | 12.1 | -- | -- | 0.441 | -- | -- | 0.276 | -- | 10.69 | 2776 | -- | -- |
| 86.79 | 0.435 | 12.1 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 9 | 27.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 13 | 27.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 7 |
| 14 | 27.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 9 |
| 45 | 28.27 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 46 | 28.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 49 | 28.33 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 51 | 28.34 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 52 | 28.34 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 56 | 28.35 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 57 | 28.35 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 60 | 28.36 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 10 |
| 61 | 28.36 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 10 |
| 72 | 28.38 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 88 | 28.39 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 89 | 28.39 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 105 | 28.42 | wind | 5 | 43200 | < th | dose independent | sin | 19 | NA |
| 132 | 28.45 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 167 | 28.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 175 | 28.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 15 |
| 204 | 28.51 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 216 | 28.52 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 243 | 28.54 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 280 | 28.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 291 | 28.57 | temperature | 20 | 1440 | > th | dose dependent | sin | 0 | NA |
| 310 | 28.58 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 325 | 28.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 357 | 28.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 374 | 28.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 22 |
| 384 | 28.61 | wind | 3 | 43200 | > th | dose dependent | sin | 19 | NA |
| 419 | 28.62 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 420 | 28.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 423 | 28.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 515 | 28.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 528 | 28.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 709 | 28.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 756 | 28.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 796 | 28.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 911 | 28.76 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 7 |
| 997 | 28.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 6 |