BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0544900 Os08g0544900|AK102923
(467 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11820.2 | chr4:7109124-7111901 REVERSE LENGTH=462 747 0.0
>AT4G11820.2 | chr4:7109124-7111901 REVERSE LENGTH=462
Length = 461
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/464 (75%), Positives = 405/464 (87%), Gaps = 8/464 (1%)
Query: 6 DVGILAMDIYFPPACVHQEALEAHDGASKGKYTIGLGQDCMAYCSEVEDVISMSLTVVAS 65
+VGILAMDIYFPP CV QEALEAHDGASKGKYTIGLGQDC+A+C+E+EDVISMS V S
Sbjct: 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTS 63
Query: 66 LLKKYNIDPKQIGRLEVGSETVIDKSKSIKTWLMHIFEESGNTDIEGVDSSNACYGGTAA 125
L +KY IDP QIGRLEVGSETVIDKSKSIKT+LM +FE+ GNTD+EGVDS+NACYGGTAA
Sbjct: 64 LFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAA 123
Query: 126 LLNCVNWVESKSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPNAPISFESKYRA 185
LLNCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAAIAMLIGP+API FESK RA
Sbjct: 124 LLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLRA 183
Query: 186 SHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYRQYCTKYEKIVGEQFSISDAEY 245
SHMAHVYDFYKP+LASEYPVVDGKLSQTCYLMALDSCY+ C K+EKI G++FSI+DA+Y
Sbjct: 184 SHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDADY 243
Query: 246 CVFHSPYNKLVQKSFARLYFNDFMRNCSTVDNDAKEKLQPFANLTSEESYQSRDLEKASQ 305
VFHSPYNKLVQKSFARL +NDF+RN S++D AKEK P+++LT +ESYQSRDLEK SQ
Sbjct: 244 IVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEKVSQ 303
Query: 306 QVAKHLYDIKVQPSTLLPKQIGNMYTASLYAALASVIYNKHDSLDGQRILMFSYGSGLTS 365
Q+AK YD KVQP+TL+PK++GNMYTASLYAA AS+I+ KH+ L G+R++MFSYGSG T+
Sbjct: 304 QIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGSTA 363
Query: 366 TMFSLRLHDGQHPFSLMNIASVLDVTTKLESRHVTSPEKFIETLKLMEHRYGAKDFETSK 425
TMFSLRL+D + PFS+ NIASV+DV KL++RH +PEKF+ET+KLMEHRYGAKDF T+K
Sbjct: 364 TMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTK 423
Query: 426 D--TSLLPPGTFYLTKVDSMYRRFYDKKAAEGKIKGCNGIANGH 467
+ LL PGT+YL +VDS+YRRFY KK +G +ANGH
Sbjct: 424 EGIIDLLAPGTYYLKEVDSLYRRFYGKKGEDG------SVANGH 461
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,260,694
Number of extensions: 421358
Number of successful extensions: 1001
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 365
Effective length of database: 8,310,137
Effective search space: 3033200005
Effective search space used: 3033200005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)