BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0535600 Os08g0535600|AK121683
         (73 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0535600  Zinc finger, Tim10/DDP-type family protein          150   1e-37
Os12g0128600  Zinc finger, Tim10/DDP-type family protein           80   3e-16
Os11g0130900  Zinc finger, Tim10/DDP-type family protein           78   1e-15

>Os08g0535600 Zinc finger, Tim10/DDP-type family protein
          Length = 73

 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 1  MENSAEMQRFIEQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFL 60
          MENSAEMQRFIEQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFL
Sbjct: 1  MENSAEMQRFIEQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFL 60

Query: 61 DMSVIIAKRFEMQ 73
          DMSVIIAKRFEMQ
Sbjct: 61 DMSVIIAKRFEMQ 73



>Os12g0128600 Zinc finger, Tim10/DDP-type family protein
          Length = 78

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 49/63 (77%)

Query: 7  MQRFIEQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDMSVII 66
          +Q  +E+E++KAM +E V KLT VCWDKCIT + GS FS+ E +CL+NCA+RFL++ ++ 
Sbjct: 11 LQAMLEEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFLELKMLT 70

Query: 67 AKR 69
           +R
Sbjct: 71 MQR 73



>Os11g0130900 Zinc finger, Tim10/DDP-type family protein
          Length = 96

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 12 EQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDMSVIIAKR 69
          E+E++KAM +E V KLT VCWDKCIT + GS FS+ E +CL+NCA+RF ++ ++I +R
Sbjct: 34 EEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQR 91



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.125    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,966,433
Number of extensions: 54044
Number of successful extensions: 199
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 3
Length of query: 73
Length of database: 17,035,801
Length adjustment: 44
Effective length of query: 29
Effective length of database: 14,738,385
Effective search space: 427413165
Effective search space used: 427413165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)