BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0535000 Os08g0535000|AK066324
         (112 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0535000  Conserved hypothetical protein                      181   1e-46
Os08g0533700  Conserved hypothetical protein                      166   4e-42
Os09g0272500  Conserved hypothetical protein                      107   3e-24

>Os08g0535000 Conserved hypothetical protein
          Length = 112

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 94/112 (83%)

Query: 1   MVLSKVEVNLIRLLEAAPRQQNQTKLVHYVTTARELLEQLGSETTLEGISSVSKAKTSEY 60
           MVLSKVEVNLIRLLEAAPRQQNQTKLVHYVTTARELLEQLGSETTLEGISSVSKAKTSEY
Sbjct: 1   MVLSKVEVNLIRLLEAAPRQQNQTKLVHYVTTARELLEQLGSETTLEGISSVSKAKTSEY 60

Query: 61  SXXXXXXXXXXXXXXXXXXMPVDENREVESSYEGDKPGSPISLSSGLRRRPM 112
           S                  MPVDENREVESSYEGDKPGSPISLSSGLRRRPM
Sbjct: 61  SEKIEALAARLAAPEPENEMPVDENREVESSYEGDKPGSPISLSSGLRRRPM 112



>Os08g0533700 Conserved hypothetical protein
          Length = 238

 Score =  166 bits (420), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 90/112 (80%)

Query: 1   MVLSKVEVNLIRLLEAAPRQQNQTKLVHYVTTARELLEQLGSETTLEGISSVSKAKTSEY 60
           M LSKVEVNL+RLLEAAPRQQNQ KLVHYVTTARELLEQLG+ETT EGISSVSKAK SEY
Sbjct: 1   MALSKVEVNLLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSKAKISEY 60

Query: 61  SXXXXXXXXXXXXXXXXXXMPVDENREVESSYEGDKPGSPISLSSGLRRRPM 112
           S                  +PVDENREVESSYEG+KPGSPISLSSGLRRRP+
Sbjct: 61  SEKIEALAARLAVPEPENEVPVDENREVESSYEGEKPGSPISLSSGLRRRPI 112



>Os09g0272500 Conserved hypothetical protein
          Length = 237

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 74/110 (67%)

Query: 1   MVLSKVEVNLIRLLEAAPRQQNQTKLVHYVTTARELLEQLGSETTLEGISSVSKAKTSEY 60
           M +SK EVNL+RLL++APRQQNQ KL+HYVTT+RELLE+L +E T EGISS++K + +EY
Sbjct: 1   MGISKTEVNLLRLLDSAPRQQNQAKLIHYVTTSRELLEKLAAENTSEGISSIAKGRLNEY 60

Query: 61  SXXXXXXXXXXXXXXXXXXMPVDENREVESSYEGDKPGSPISLSSGLRRR 110
           S                    V+  R+ ES  EG++  SPI+LS GLRRR
Sbjct: 61  SERIEELAARLASLVPGYENAVEAIRKEESYLEGEQIRSPIALSPGLRRR 110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.124    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,636,276
Number of extensions: 61889
Number of successful extensions: 83
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 3
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)