BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0534900 Os08g0534900|AK061777
         (346 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0534900  Armadillo-like helical domain containing protein    671   0.0  
Os02g0305700  Armadillo-like helical domain containing protein    669   0.0  
Os08g0534200  Armadillo-like helical domain containing protein    425   e-119
Os01g0931200  Armadillo-like helical domain containing protein    189   3e-48

>Os08g0534900 Armadillo-like helical domain containing protein
          Length = 346

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/346 (95%), Positives = 332/346 (95%)

Query: 1   MSDSALKDLNLAQSAELEKTKDSSAKSCITKPVLNGNKCNNTEENAPPVLPDAVTNGCEA 60
           MSDSALKDLNLAQSAELEKTKDSSAKSCITKPVLNGNKCNNTEENAPPVLPDAVTNGCEA
Sbjct: 1   MSDSALKDLNLAQSAELEKTKDSSAKSCITKPVLNGNKCNNTEENAPPVLPDAVTNGCEA 60

Query: 61  GNADVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQLAIFHKDRLQELL 120
           GNADVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQLAIFHKDRLQELL
Sbjct: 61  GNADVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQLAIFHKDRLQELL 120

Query: 121 EPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSSQDKRFVC 180
           EPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSSQDKRFVC
Sbjct: 121 EPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSSQDKRFVC 180

Query: 181 EAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPSLGVEGIKEYGMD 240
           EAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPSLGVEGIKEYGMD
Sbjct: 181 EAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPSLGVEGIKEYGMD 240

Query: 241 KLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEVXXXXXXXXXXXXXXGAE 300
           KLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEV              GAE
Sbjct: 241 KLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEVDDAPATSPDADADAGAE 300

Query: 301 SWEAFCQSKLSPLSAQAILRVTSTTKEGVAVGVTSTPPKEGVTVGC 346
           SWEAFCQSKLSPLSAQAILRVTSTTKEGVAVGVTSTPPKEGVTVGC
Sbjct: 301 SWEAFCQSKLSPLSAQAILRVTSTTKEGVAVGVTSTPPKEGVTVGC 346



>Os02g0305700 Armadillo-like helical domain containing protein
          Length = 346

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/346 (95%), Positives = 331/346 (95%)

Query: 1   MSDSALKDLNLAQSAELEKTKDSSAKSCITKPVLNGNKCNNTEENAPPVLPDAVTNGCEA 60
           MSDSALKDLNLAQSAELEKTKDSSAKSCITKPVLNGNKCNNTEENAPPVLPDAVTNGCEA
Sbjct: 1   MSDSALKDLNLAQSAELEKTKDSSAKSCITKPVLNGNKCNNTEENAPPVLPDAVTNGCEA 60

Query: 61  GNADVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQLAIFHKDRLQELL 120
           GNADVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQLAIFHKDRLQELL
Sbjct: 61  GNADVEYIDSESLTDLEDAGATLSTLVARLDSKDWVMTCEALNNVRQLAIFHKDRLQELL 120

Query: 121 EPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSSQDKRFVC 180
           EPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSSQDKRFVC
Sbjct: 121 EPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSSQDKRFVC 180

Query: 181 EAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPSLGVEGIKEYGMD 240
           EAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVP LGVEGIKEYGMD
Sbjct: 181 EAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPRLGVEGIKEYGMD 240

Query: 241 KLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEVXXXXXXXXXXXXXXGAE 300
           KLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEV              GAE
Sbjct: 241 KLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEVDDAPATSPDADADAGAE 300

Query: 301 SWEAFCQSKLSPLSAQAILRVTSTTKEGVAVGVTSTPPKEGVTVGC 346
           SWEAFCQSKLSPLSAQAILRVTSTTKEGVAVGVTSTPPKEGVTVGC
Sbjct: 301 SWEAFCQSKLSPLSAQAILRVTSTTKEGVAVGVTSTPPKEGVTVGC 346



>Os08g0534200 Armadillo-like helical domain containing protein
          Length = 233

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/226 (93%), Positives = 212/226 (93%)

Query: 121 EPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSSQDKRFVC 180
           EPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSSQDKRFVC
Sbjct: 8   EPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGDLMVDSIDPLLVQLFLKSSQDKRFVC 67

Query: 181 EAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPSLGVEGIKEYGMD 240
           EAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPSLGVEGIKEYGMD
Sbjct: 68  EAAEAALISMTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVPSLGVEGIKEYGMD 127

Query: 241 KLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEVXXXXXXXXXXXXXXGAE 300
           KLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEV              GAE
Sbjct: 128 KLVQIAATQLSDQLPESREAARKLALELQAFYEKSQASSSGEVDDAPATSPDADADAGAE 187

Query: 301 SWEAFCQSKLSPLSAQAILRVTSTTKEGVAVGVTSTPPKEGVTVGC 346
           SWEAFCQSKLSPLSAQAILRVTSTTKEGVAVGVTSTPPKEGVTVGC
Sbjct: 188 SWEAFCQSKLSPLSAQAILRVTSTTKEGVAVGVTSTPPKEGVTVGC 233



>Os01g0931200 Armadillo-like helical domain containing protein
          Length = 317

 Score =  189 bits (479), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/295 (38%), Positives = 172/295 (58%), Gaps = 22/295 (7%)

Query: 36  GNKCNNTEENAPPVLPDAVTNGCEAGNADVEYIDSESLTDLEDAGATLSTLVARLDSKDW 95
           G +  N E +AP     A T         VEY+ SE L  +    A  + LVA LDSKDW
Sbjct: 39  GKRKKNDENSAP----KATTEQA------VEYVRSEDLQPVPHPKAKAAGLVAELDSKDW 88

Query: 96  VMTCEALNNVRQLAIFHKDRLQELLEPLVPLIVKSVKNPRSAVCKTALMTCADIFKAYGD 155
           +  C+ALN+ R+LAI H   L  +L  ++  IVK++K+PRSAVCKT++M C D+F ++G+
Sbjct: 89  IRACDALNDARRLAIHHPSLLNPILGKVMLAIVKTMKSPRSAVCKTSIMACTDVFDSFGN 148

Query: 156 LMV----DSIDPLLVQLFLKSSQDKRFVCEAAEAALISMTSWIAPSALLPKMQPYLKNRN 211
           L+     D+ D LL+QL LK+SQDKRFV E AE A+ +M + + P  LL K++ Y+ + N
Sbjct: 149 LLSSASDDAFDKLLLQLLLKASQDKRFVAEEAEKAMRAMAASMPPLPLLRKLKAYVHHAN 208

Query: 212 PRIRAKASMCFSKSVPSLGVEGIKEYGMDKLVQIAATQLSDQLPESREAARKLALELQAF 271
            R+RAKA++  S+    + V  +KE+GM  ++Q+AA  LSD+LPE+REAAR +       
Sbjct: 209 LRVRAKAAVAMSQCASRMDVATMKEFGMSAMLQVAAELLSDRLPEAREAARGMV------ 262

Query: 272 YEKSQASSSGEVXXXXXXXXXXXXXXGAESWEAFCQSKLSPLSAQAILRVTSTTK 326
              S  ++  +                A SWE+ C   L P+SAQ++ ++ S ++
Sbjct: 263 --NSMHAAFSKEAAAAREEEEGAAAAAAASWESLCALSLPPISAQSVAKIVSQSQ 315



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,116,317
Number of extensions: 354936
Number of successful extensions: 759
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)