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Os02g0305700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0144) R2 : 0.0812
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.193 (0.0304) R2dN8 : 0.105 R2N8 : 0.0812
σ : 0.272
deviance : 33.97
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
9.5 0.145 12.7 0.595 0.46 0.297 0.48 -0.272 0.316 21.7 7.805 1483 -- --
9.6 0.144 12.7 0.59 0.465 0.307 0.465 -- 0.31 21.7 7.05 1496 -- --
10.35 0.15 12.7 0.584 0.46 0.299 -- -0.144 0.312 21.6 7.172 1491 -- --
10.34 0.15 12.7 0.553 0.454 0.292 -- -- 0.304 21.7 7.17 1499 -- --
13.72 0.173 12.7 0.53 -- 0.349 -- 0.216 0.263 -- 6.114 1595 -- --
11.43 0.158 12.7 0.547 0.492 -- 0.399 -- 0.254 21.8 -- -- -- --
12.03 0.162 12.7 0.532 0.491 -- -- -- 0.253 21.8 -- -- -- --
14 0.175 12.7 0.528 -- 0.349 -- -- 0.263 -- 6.114 1595 -- --
17.93 0.197 12.7 -- 0.48 0.248 -- -- 0.273 21.8 40 7305 -- --
26.38 0.24 12.7 0.537 -- -- -- -- 0.253 -- -- -- -- --
19.49 0.207 12.8 -- 0.492 -- -- -- 0.194 21.9 -- -- -- --
21.37 0.216 12.7 -- -- 0.353 -- -- 0.204 -- 6.114 1595 -- --
33.97 0.272 12.7 -- -- -- -- -- 0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 9.44 radiation 10 1440 > th dose independent rect. 9 21
2 9.45 radiation 10 1440 > th dose independent rect. 9 9
14 9.45 radiation 10 1440 < th dose dependent sin 21 NA
17 9.47 radiation 10 1440 < th dose dependent rect. 8 12
51 9.50 radiation 10 1440 > th dose independent sin 20 NA
95 9.53 radiation 10 1440 < th dose dependent rect. 12 18
129 9.56 radiation 10 1440 < th dose independent rect. 15 1
130 9.56 humidity 60 1440 > th dose dependent rect. 11 3
187 9.58 radiation 20 1440 < th dose dependent rect. 13 3
214 9.60 radiation 10 1440 < th dose independent rect. 14 3
339 9.65 humidity 70 1440 > th dose independent rect. 11 2
387 9.66 radiation 10 1440 > th dose independent no NA NA
388 9.66 radiation 20 1440 > th dose independent rect. 11 2
482 9.66 humidity 90 1440 < th dose dependent rect. 11 3
497 9.67 radiation 10 1440 > th dose independent rect. 17 23
509 9.68 humidity 70 1440 < th dose independent rect. 11 2
519 9.68 humidity 60 1440 > th dose dependent rect. 5 11
520 9.68 humidity 90 1440 < th dose dependent rect. 22 18
590 9.70 humidity 60 1440 > th dose dependent rect. 23 17
597 9.71 humidity 70 1440 < th dose independent rect. 11 6
600 9.71 humidity 70 1440 > th dose independent rect. 11 7
605 9.71 radiation 10 1440 > th dose independent rect. 13 23
606 9.71 radiation 10 1440 > th dose independent rect. 15 23
609 9.71 radiation 10 1440 < th dose dependent no NA NA
703 9.72 humidity 60 1440 > th dose dependent sin 1 NA
790 9.73 humidity 90 1440 < th dose dependent rect. 3 13
909 9.75 humidity 70 1440 > th dose independent rect. 19 23
960 9.76 humidity 70 1440 > th dose independent sin 21 NA
967 9.76 humidity 70 1440 > th dose independent rect. 4 14