Os08g0534900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os08g0534900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.08 | 0.358 | 7.34 | -0.3 | 0.595 | -1.01 | 0.11 | -0.236 | 0.077 | 1.16 | 76 | 1148 | -- | -- |
| 58.15 | 0.355 | 7.34 | -0.286 | 0.597 | -1.03 | 0.0968 | -- | 0.0736 | 1.1 | 76 | 1143 | -- | -- |
| 58.13 | 0.355 | 7.34 | -0.3 | 0.595 | -1.01 | -- | -0.173 | 0.0764 | 1.19 | 75.9 | 1148 | -- | -- |
| 58.16 | 0.355 | 7.34 | -0.286 | 0.598 | -1.03 | -- | -- | 0.0782 | 1.16 | 75.89 | 1143 | -- | -- |
| 68.53 | 0.386 | 7.33 | -0.315 | -- | -0.873 | -- | -0.081 | 0.1 | -- | 79.43 | 1730 | -- | -- |
| 80.68 | 0.421 | 7.32 | -0.474 | 0.395 | -- | -0.124 | -- | 0.139 | 1.73 | -- | -- | -- | -- |
| 80.74 | 0.421 | 7.32 | -0.47 | 0.395 | -- | -- | -- | 0.14 | 1.68 | -- | -- | -- | -- |
| 68.57 | 0.386 | 7.33 | -0.315 | -- | -0.886 | -- | -- | 0.101 | -- | 79.68 | 1727 | -- | -- |
| 60.24 | 0.361 | 7.34 | -- | 0.602 | -1.08 | -- | -- | 0.102 | 1.16 | 75.49 | 1149 | -- | -- |
| 90.22 | 0.444 | 7.32 | -0.454 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 86.56 | 0.435 | 7.31 | -- | 0.386 | -- | -- | -- | 0.192 | 1.64 | -- | -- | -- | -- |
| 71 | 0.392 | 7.33 | -- | -- | -0.911 | -- | -- | 0.117 | -- | 77.09 | 1731 | -- | -- |
| 95.66 | 0.457 | 7.31 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.29 | humidity | 70 | 720 | > th | dose independent | sin | 15 | NA |
| 5 | 56.58 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 12 |
| 8 | 56.66 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 10 |
| 16 | 56.97 | humidity | 60 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 30 | 57.02 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 33 | 57.10 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 18 |
| 41 | 57.33 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 44 | 57.44 | humidity | 70 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 57 | 57.45 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 59 | 57.52 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 61 | 57.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 79 | 57.85 | humidity | 70 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 96 | 57.91 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |
| 102 | 57.95 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 106 | 57.98 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 118 | 58.01 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 11 |
| 119 | 58.01 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 16 |
| 122 | 58.02 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 6 |
| 177 | 58.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 231 | 58.67 | humidity | 60 | 4320 | < th | dose dependent | sin | 12 | NA |
| 242 | 58.78 | humidity | 50 | 4320 | > th | dose independent | sin | 13 | NA |
| 311 | 59.15 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 313 | 59.16 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 318 | 59.17 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 319 | 59.17 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 371 | 59.52 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 14 |
| 396 | 59.65 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 17 |
| 406 | 59.75 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 409 | 59.76 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 16 |
| 411 | 59.77 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 428 | 59.83 | humidity | 70 | 720 | > th | dose independent | rect. | 5 | 15 |
| 433 | 59.84 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 10 |
| 443 | 59.86 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 13 |
| 465 | 59.89 | temperature | 30 | 720 | < th | dose independent | sin | 13 | NA |
| 506 | 60.00 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 8 |
| 515 | 60.03 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 592 | 60.22 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 601 | 60.26 | humidity | 70 | 1440 | < th | dose dependent | sin | 16 | NA |
| 640 | 60.33 | humidity | 50 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 641 | 60.33 | humidity | 50 | 4320 | > th | dose independent | rect. | 22 | 19 |
| 650 | 60.36 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 666 | 60.38 | humidity | 50 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 690 | 60.39 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 767 | 60.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 847 | 60.56 | humidity | 50 | 4320 | < th | dose independent | sin | 12 | NA |
| 851 | 60.56 | humidity | 80 | 1440 | < th | dose dependent | sin | 22 | NA |
| 880 | 60.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 906 | 60.60 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 914 | 60.63 | radiation | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 936 | 60.66 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 947 | 60.69 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 994 | 60.70 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 996 | 60.71 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 1000 | 60.71 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 17 |